Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1433 ATGGACAAGAATATTGAAGTGCAAGATGAGAACAAAGTGGAAGAAGATGATGATTTCTTCATCCCACCCCTCAATTTTGCAATGGTTGATAATGGCATTTTCCGTTCTGGTTTCCCTGAACCTGTCAACTTCTCCTTCCTTCAAACCCTTTTTCTCCGTTCCATCATATATCTGTGTCCTGAACCATATCCAGAAGTCAACTTGGAGTTCCTCAAGTCAAATGGAATCAAGCTTTATCACTTTGGGATTGAGAGTCATAAGGAGCCTTTTGTAAACATCCCAGAGGACACAATCTGTGAAGCACTAAGAGCTCTCCTTGATATCAGGAACCACCCAGTTATTATTCACTGCAAACGGGGAAAGCACCGAACAGGTTGTTTAGTAGGATGCTATAGAAAAATGCAAAAATGGTGCTTGTCATCTGTGTTTGACGAGTACCAGCGTTTTGCAGCTTCTAAAGCAAGAGTTTCAGATCAGATATTTGTTGAGTTGTTTGATATTTCCAGCATGAACCATTTTCCTATACCATTTTCATGTTTGAAGAGGTAA 549 0.4007 MDKNIEVQDENKVEEDDDFFIPPLNFAMVDNGIFRSGFPEPVNFSFLQTLFLRSIIYLCPEPYPEVNLEFLKSNGIKLYHFGIESHKEPFVNIPEDTICEALRALLDIRNHPVIIHCKRGKHRTGCLVGCYRKMQKWCLSSVFDEYQRFAASKARVSDQIFVELFDISSMNHFPIPFSCLKR 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1433 182 Pfam Tyrosine phosphatase family 21 170 IPR004861 -
Lal18g1433 182 Gene3D Protein tyrosine phosphatase superfamily 19 169 IPR029021 -
Lal18g1433 182 ProSiteProfiles Dual specificity protein phosphatase domain profile. 25 179 IPR020422 GO:0006470|GO:0008138
Lal18g1433 182 PANTHER PHOSPHOTYROSINE PROTEIN PHOSPHATASES SUPERFAMILY PROTEIN ISOFORM 1 12 181 - -
Lal18g1433 182 PRINTS Plant and fungal dual specificity phosphatase signature 20 37 IPR020428 GO:0016791
Lal18g1433 182 PRINTS Plant and fungal dual specificity phosphatase signature 57 70 IPR020428 GO:0016791
Lal18g1433 182 PRINTS Plant and fungal dual specificity phosphatase signature 76 90 IPR020428 GO:0016791
Lal18g1433 182 PRINTS Plant and fungal dual specificity phosphatase signature 93 107 IPR020428 GO:0016791
Lal18g1433 182 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 20 167 IPR029021 -
Lal18g1433 182 PANTHER TYROSINE-PROTEIN PHOSPHATASE 12 181 - -
Lal18g1433 182 CDD PFA-DSP_Siw14 20 166 - -
Lal18g1433 182 ProSitePatterns Tyrosine specific protein phosphatases active site. 115 125 IPR016130 GO:0016311|GO:0016791
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1433 Lal-Chr18 16408076 16409667 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g1433 8 182 Protein tyrosine phosphatase (PTP) family AT4G03960 72.881 3.57e-96 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g1433 K18045 - gmx:100814279 318.931
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1433 18 16408076 16409667 Lal22g0183 22 1139249 1143259 LSH
Lal18g1433 18 16408076 16409667 Lal6g0195 6 1331755 1336730 LSH