Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1420 ATGCCAGAAAACAGGCAACCTCTCAGGAATGGTGCTTCTAATGACTCTGGTGATAACATTGAAGAAGCCATCCGGCGTTTGAAAATCAATGATAATCGGGATATAGATGCTGCTGCTCAATCTACCCCACTTCCAGAACGACCTGGTGAACCTGATTGCTTATACTATTTGAGGACTAAAATGTGCAGTTACGGGGGTAACTGCCGCTATAACCATCCTGCTAACGTTTCACTGTTAGATTTTCAGGGTACTCATTATGGTGAAGAACTCCCTGAGAGAATTGGGCAACCTGATTGTGAGTATTTTCTTAAAACTGGGACATGCAAGTATGGTTCAACATGTAAATATCATCATCCAAAAGACAGGAAAGGTGCCGCTCCTGTATCATTTAATTCTCTTGGTCTTCCCATGCGTCAGGTTTGTATCCCTTCATCATTTAATTCTCTTGGTCTTCCCATGCGTCAGGAAGAAAAATCATGTCCATATTACATGAGAACTGGGTCTTGTAAGTTTGGACTGGCATGCAAGTTTCATCATCCACAGGTTGGAGTTTCCCCCGTGGCTGGATCTCCTACCTCGGCAATTCTTCCTGCATCTGGTTTACAATATGTTGGTGGGTTTTCCGGATGGCAATTACCAAGAATGTCATACTTATCTGGGCAGGGCATTCAATGTTATGTGCCTCCTTTTCTATCTTCTCCACAAAGCATTATACCTGCACAGAACTGGAATACCTACATGGGAGGTATGAGCTCTGCTATGTCTACCGCTTTTCTTGGATCTAATCTTGTTTACGACACCATGAATCTGGGTGGATCCGGTCTCCCAGATAGACCTGATCAACCAGAATGCAAATACTTTATTAGCACCGGTACCTGCAAATATGGATCTGATTGCAAGTTTCACCATCCAAAAGAAAGAATCGCTCAATCATCGATGAATCCACTTGGTCTTCCTGTCAGACCTGGGCATGCGATTTGTTCTTATTACAGACTCTATGGAATATGCAAGTTTGGCCCAACATGCAAATTTGATCATCCAGTTTTGGCTACCCCTCAGAACTATGGCATGACCTCACCTGCTTTTCCTGTACTTGATACATCTCTGATTGGTAGTCCAACAGGTTCGTCAAGTGTCCAACCACCTGAAACATCTCCATCTAAATTATCAACTGACAACCTTCAACACTCTGATGCAAAAGTTACCGAAGATTCATCCGAACAAGCCGAAACTACTACACCATATTCCTTCCCAGCCACCTCAGAGTCTTAA 1272 0.4332 MPENRQPLRNGASNDSGDNIEEAIRRLKINDNRDIDAAAQSTPLPERPGEPDCLYYLRTKMCSYGGNCRYNHPANVSLLDFQGTHYGEELPERIGQPDCEYFLKTGTCKYGSTCKYHHPKDRKGAAPVSFNSLGLPMRQVCIPSSFNSLGLPMRQEEKSCPYYMRTGSCKFGLACKFHHPQVGVSPVAGSPTSAILPASGLQYVGGFSGWQLPRMSYLSGQGIQCYVPPFLSSPQSIIPAQNWNTYMGGMSSAMSTAFLGSNLVYDTMNLGGSGLPDRPDQPECKYFISTGTCKYGSDCKFHHPKERIAQSSMNPLGLPVRPGHAICSYYRLYGICKFGPTCKFDHPVLATPQNYGMTSPAFPVLDTSLIGSPTGSSSVQPPETSPSKLSTDNLQHSDAKVTEDSSEQAETTTPYSFPATSES 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1420 423 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 323 347 IPR000571 GO:0046872
Lal18g1420 423 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 96 120 IPR000571 GO:0046872
Lal18g1420 423 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 158 181 IPR000571 GO:0046872
Lal18g1420 423 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 280 305 IPR000571 GO:0046872
Lal18g1420 423 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 49 73 IPR000571 GO:0046872
Lal18g1420 423 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 26 145 406 - -
Lal18g1420 423 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 26 4 145 - -
Lal18g1420 423 ProSiteProfiles Zinc finger C3H1-type profile. 278 306 IPR000571 GO:0046872
Lal18g1420 423 ProSiteProfiles Zinc finger C3H1-type profile. 321 349 IPR000571 GO:0046872
Lal18g1420 423 SUPERFAMILY CCCH zinc finger 153 181 IPR036855 GO:0046872
Lal18g1420 423 MobiDBLite consensus disorder prediction 368 423 - -
Lal18g1420 423 PANTHER PROTEIN PHOSPHATASE RELATED 4 145 - -
Lal18g1420 423 PANTHER PROTEIN PHOSPHATASE RELATED 145 406 - -
Lal18g1420 423 SUPERFAMILY CCCH zinc finger 98 121 IPR036855 GO:0046872
Lal18g1420 423 SUPERFAMILY CCCH zinc finger 323 348 IPR036855 GO:0046872
Lal18g1420 423 ProSiteProfiles Zinc finger C3H1-type profile. 154 182 IPR000571 GO:0046872
Lal18g1420 423 SUPERFAMILY CCCH zinc finger 52 74 IPR036855 GO:0046872
Lal18g1420 423 ProSiteProfiles Zinc finger C3H1-type profile. 47 75 IPR000571 GO:0046872
Lal18g1420 423 Gene3D - 146 187 - -
Lal18g1420 423 MobiDBLite consensus disorder prediction 406 423 - -
Lal18g1420 423 Gene3D - 46 132 - -
Lal18g1420 423 Gene3D - 277 359 - -
Lal18g1420 423 MobiDBLite consensus disorder prediction 369 396 - -
Lal18g1420 423 ProSiteProfiles Zinc finger C3H1-type profile. 93 121 IPR000571 GO:0046872
Lal18g1420 423 SUPERFAMILY CCCH zinc finger 282 307 IPR036855 GO:0046872
Lal18g1420 423 SMART c3hfinal6 156 181 IPR000571 GO:0046872
Lal18g1420 423 SMART c3hfinal6 93 120 IPR000571 GO:0046872
Lal18g1420 423 SMART c3hfinal6 278 305 IPR000571 GO:0046872
Lal18g1420 423 SMART c3hfinal6 47 74 IPR000571 GO:0046872
Lal18g1420 423 SMART c3hfinal6 321 348 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1420 Lal-Chr18 16325588 16329479 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g1420 16 407 C3H Transcription Factor Family AT1G04990 45.074 1.09e-105 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lal18g1420 zf-CCCH 2.4e-08 CL0537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1420 18 16325588 16329479 Lal22g0185 22 1166850 1171295 LSH
Lal18g1420 18 16325588 16329479 Lal6g0196 6 1350908 1354969 LSH