Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1419 ATGCACCCACTCATAAACTCAGATCCAACACCACCAAACGACACCGTTCCAACACAACCCACAAACCCTATCATCGAAACAAGATTCCGCGGCGTCAGGAAGCGACCATGGGGTCGATTCGCCGCAGAGATAAGAGACCCATCGAAGAAAACGCGCGTCTGGTTAGGAACCTTCGATTCCGCCGAAGACGCCGCCCGAGCCTACGATTCAGCCGCTTTATCCTTCCGAGGACCCAAAGCCAAGACCAATTTTCCTTTCTCTTCCTCAAACCCTACTCAAATCGCAATCTACAATCGCGATTTCCAAAACCCTCGCGCTCACCGGTTCACTCAACCGGTGAACCGACCAACCAGCAGCGGCATGAGTAGCACGGTTGAATCGTTCAGCGGACCTAGGGTTCCGTCCTCATCGATCGTGATCCATCACCGGAGACCTCTTGATCCGGACACCGGCGATGATTGTCATAGCGATTGTGATTCTTCGTCTTCAGTGATCGATGATGAGGATTGCGTGCTCACTTCTTCGTTCCGGAAGTCCCTGCCTTTCGATCTCAACCTCCCTCCACCGGAGGATGACAACGGCGGCGGCGGCGGCGATTTCACCACCAATGAGCTTCTTGTAACCGCCCTGTGTCTCTAA 639 0.5399 MHPLINSDPTPPNDTVPTQPTNPIIETRFRGVRKRPWGRFAAEIRDPSKKTRVWLGTFDSAEDAARAYDSAALSFRGPKAKTNFPFSSSNPTQIAIYNRDFQNPRAHRFTQPVNRPTSSGMSSTVESFSGPRVPSSSIVIHHRRPLDPDTGDDCHSDCDSSSSVIDDEDCVLTSSFRKSLPFDLNLPPPEDDNGGGGGDFTTNELLVTALCL 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1419 212 SMART rav1_2 28 91 IPR001471 GO:0003700|GO:0006355
Lal18g1419 212 MobiDBLite consensus disorder prediction 145 164 - -
Lal18g1419 212 MobiDBLite consensus disorder prediction 145 162 - -
Lal18g1419 212 SUPERFAMILY DNA-binding domain 28 87 IPR016177 GO:0003677
Lal18g1419 212 PRINTS Ethylene responsive element binding protein signature 29 40 IPR001471 GO:0003700|GO:0006355
Lal18g1419 212 PRINTS Ethylene responsive element binding protein signature 51 67 IPR001471 GO:0003700|GO:0006355
Lal18g1419 212 MobiDBLite consensus disorder prediction 109 134 - -
Lal18g1419 212 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 3 25 184 - -
Lal18g1419 212 Pfam AP2 domain 27 77 IPR001471 GO:0003700|GO:0006355
Lal18g1419 212 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 25 184 - -
Lal18g1419 212 MobiDBLite consensus disorder prediction 1 22 - -
Lal18g1419 212 Gene3D AP2/ERF domain 27 87 IPR036955 GO:0003700|GO:0006355
Lal18g1419 212 MobiDBLite consensus disorder prediction 181 200 - -
Lal18g1419 212 CDD AP2 27 85 IPR001471 GO:0003700|GO:0006355
Lal18g1419 212 ProSiteProfiles AP2/ERF domain profile. 28 85 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1419 Lal-Chr18 16324136 16324774 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g1419 24 188 AP2-EREBP Transcription Factor Family AT1G50640 53.005 2.76e-35 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lal18g1419 AP2 2.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g1419 K09286 - cpap:110808864 184.111
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1419 18 16324136 16324774 Lal22g0187 22 1173449 1174096 LSH