Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1418 ATGGAAAATTCCGACGACAACGAACCCCAACATAAGAGGCCTCACCTCACCACTGTGCCCAGAAACTTCACCAAAAACAAAGACGTACCCACCATAAACTCCACTGCTTTTATGTTTATCGCTGATTATCTAATTGTGAATTTCAGATGCAAGATGTTTCATTACATTGAGAATCATCCATTTTTTAAAAATGCTGATGCAGGAGTTGTAGAGGTCCACAAGCAGCTTGTTGAACAGACAGAAACCCAAAAACATAATTTGCATAATCTTGAAGAAAAAATTAAACAATTAAAAGAAAGACAAAAGGCTTATGATGACTTGTTAATTTCAGTGAACCAATGCTGGATTCAGTTAATTAATGATCTAGTTCTTCTTGGTATACAAGCTGGGAGAGGGCCTGATGCAATGAAAGCTTTGGATAACCCTGATAGTCCTCAAGGTTCACTTCCCTTGTGTCCAGTGGAGGATATATTTCTATGCAAATTAATCCAGAAAGATTCTGTTGAAGGAAGCAGTATTGAAGAGATCATTAATTATGTTGAGGAAGCCCTTGCTTTACGTCAGTCATCTACATTCGAGTTGTTGAAACTCCTTCAAGACACCATTGATGCTCAGAGAGAAAGAATTGACAGTGTATCACAGGTTTTGCATGGAGATGTATCTTCAGAAGATCTTATCATCCAAATGTCTAAGATTGATGATATGATGAAAGAGGATGCAGATAATTTATGTGAAGTGATTGATGCCCTTAATGTGAAGCAAAAAGAGAGTTCACGGAGGAAGCTTGAGGAAGATCTCGCGGAAATGAACAGACAAATTGCTGAGCTGAGCTCTGAAACTGGTGAAGAAGCAGTACGAAAAGTTGAAGATGAATTAATGGTTTGCAAGAACATGATCAAATGTACTGTCTGTTATGATCGTCTAAAGGAGGTTGTGATTGTGAAGTGCTGTCATATGTTCTGCAGTCAATGCATTCAAAGAAATATTGAGCTCCGCCACCGGAAGTGTCATGCCTGTGGAACAGCATTTGGTCAGAGTGATGTTCGCTCTGTTAAAATATGA 1062 0.387 MENSDDNEPQHKRPHLTTVPRNFTKNKDVPTINSTAFMFIADYLIVNFRCKMFHYIENHPFFKNADAGVVEVHKQLVEQTETQKHNLHNLEEKIKQLKERQKAYDDLLISVNQCWIQLINDLVLLGIQAGRGPDAMKALDNPDSPQGSLPLCPVEDIFLCKLIQKDSVEGSSIEEIINYVEEALALRQSSTFELLKLLQDTIDAQRERIDSVSQVLHGDVSSEDLIIQMSKIDDMMKEDADNLCEVIDALNVKQKESSRRKLEEDLAEMNRQIAELSSETGEEAVRKVEDELMVCKNMIKCTVCYDRLKEVVIVKCCHMFCSQCIQRNIELRHRKCHACGTAFGQSDVRSVKI 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1418 353 PANTHER RING FINGER PROTEIN-RELATED 36 258 IPR013956 GO:0004842|GO:0010390
Lal18g1418 353 PANTHER RING FINGER PROTEIN-RELATED 253 353 IPR013956 GO:0004842|GO:0010390
Lal18g1418 353 MobiDBLite consensus disorder prediction 1 15 - -
Lal18g1418 353 ProSitePatterns Zinc finger RING-type signature. 316 325 IPR017907 -
Lal18g1418 353 SUPERFAMILY RING/U-box 300 344 - -
Lal18g1418 353 ProSiteProfiles Zinc finger RING-type profile. 301 339 IPR001841 -
Lal18g1418 353 MobiDBLite consensus disorder prediction 1 24 - -
Lal18g1418 353 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 246 352 IPR013083 -
Lal18g1418 353 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BRE1 253 353 - -
Lal18g1418 353 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BRE1 36 258 - -
Lal18g1418 353 SMART ring_2 301 339 IPR001841 -
Lal18g1418 353 Coils Coil 73 107 - -
Lal18g1418 353 Pfam Zinc finger, C3HC4 type (RING finger) 300 342 - -
Lal18g1418 353 Coils Coil 252 279 - -
Lal18g1418 353 CDD RING-HC_BRE1_like 299 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1418 Lal-Chr18 16315463 16320221 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g1418 K10696 - gmx:100811776 265.388
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1418 18 16315463 16320221 Lal22g0188 22 1181122 1192940 LSH