Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1411 ATGAGGAAAAGAGAAAGGGAGAACCCTTGTGCTGTGTGTGGGCACTATCACAAGTACGAAGAAGGCGAAGTGTGTTCAATTTGCGGCCACCGTTTGACGGTTGGTGAGAAAACTCCGGTGCAAATTAGCGCCTTCCCGTCGGTGATCTTGCCGGAGTTTCTTTACCTCGGAAGCTACGACAACGCTTCACGCTCGGAGCTTCTCAAGACTCAGGGAATCACTCGTATCCTCAATACTGTCCCTTCTTGTCAAAATCTCTACAAGAACTCATTTACCTATCACTGCCTCCCAGATGACAAAACTTTGCCATTTGATGAAGGAATTCAATTTTTAGAGCAGTGTGAGAAGGACAAGGCTCGTGTGTTGGTTCATTGCATGTCAGGAAAGAATAGGTCTCCGGCTATTGTAATTGCGTACTTGATGAAGTCCAAAGGATGGAGACTTGCACAAAGCTATCAGTGGGTAAAGGAACGAAGACCGTCTGTTGAATTAACTGAAGGTAATTACCAGCAACTGCAGGAGTTAGAGCACAAGATCTTTGTATCAAATGATGATGGAAGCTCTGTGCTGCCCGGTTTTCCACCTGCAAGCGCAATTAGCTTTGGCTTCCCAAAGATCAATGATTCACCTCAACTTCCTCCCTTCAGCGGTGCCGGAACTACTTCAATTTTTGCCCAACCACCCCTAGACATTGCTCCCATTGCATTTACATTTGGAGCCGGTCAGGTGCAGAACAGCGCGACTGGAAGCCCATTTAGTGCAGATCCACCTAATCCAAATGGTACTGATATCCAAATGGATGGTTCTTGA 810 0.4654 MRKRERENPCAVCGHYHKYEEGEVCSICGHRLTVGEKTPVQISAFPSVILPEFLYLGSYDNASRSELLKTQGITRILNTVPSCQNLYKNSFTYHCLPDDKTLPFDEGIQFLEQCEKDKARVLVHCMSGKNRSPAIVIAYLMKSKGWRLAQSYQWVKERRPSVELTEGNYQQLQELEHKIFVSNDDGSSVLPGFPPASAISFGFPKINDSPQLPPFSGAGTTSIFAQPPLDIAPIAFTFGAGQVQNSATGSPFSADPPNPNGTDIQMDGS 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1411 269 ProSiteProfiles Dual specificity protein phosphatase domain profile. 45 181 IPR020422 GO:0006470|GO:0008138
Lal18g1411 269 SMART dsp_5 45 178 IPR020422 GO:0006470|GO:0008138
Lal18g1411 269 Gene3D Protein tyrosine phosphatase superfamily 40 187 IPR029021 -
Lal18g1411 269 Pfam Dual specificity phosphatase, catalytic domain 54 177 IPR000340 GO:0008138|GO:0016311
Lal18g1411 269 CDD DSP_plant_IBR5-like 46 174 - -
Lal18g1411 269 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 46 182 IPR029021 -
Lal18g1411 269 ProSitePatterns Tyrosine specific protein phosphatases active site. 123 133 IPR016130 GO:0016311|GO:0016791
Lal18g1411 269 MobiDBLite consensus disorder prediction 245 269 - -
Lal18g1411 269 PANTHER PROTEIN-TYROSINE-PHOSPHATASE IBR5 1 269 - -
Lal18g1411 269 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 102 170 IPR000387 GO:0016311|GO:0016791
Lal18g1411 269 PANTHER PROTEIN-TYROSINE-PHOSPHATASE IBR5 1 269 IPR044212 GO:0009734|GO:0009738|GO:0033549|GO:0043407
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1411 Lal-Chr18 16271801 16275501 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g1411 1 165 Protein tyrosine phosphatase (PTP) family AT2G04550 74.556 2.12e-96 279
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g1411 K04459 - gmx:100808721 462.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1411 18 16271801 16275501 Lal22g0193 22 1208517 1212764 LSH
Lal18g1411 18 16271801 16275501 Lal6g0202 6 1379220 1383809 LSH