Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1392 ATGGAGGTTTATGATAAAGGTTGTGGCATAAACATTGTGACTTTGGATTCTTCAAGAAAGAGAAAAAGTAGGAACAGAAGGGGTGGGCCTAGATCTGTAGCTGAGACTATTGCTAAATGGAAGGAATACAATATGAATCTAGAGTCTGCAAGAGAAGATTGTAAGCCAAGGCGAAAAGCCCCAGCTAAGGGTTCAAAGAAAGGGTGCATGAAAGGTAAAGGAGGACCCCAAAACTCACAGTGTAATTACAGGGGTGTTAGGCAGAGGACATGGGGAAAGTGGGTTGGCGAAATTCGAGAACCGAATAGAGGAAGAAGACTTTGGTTGGGTACCTTTTCTACTGCTCAAGAAGCTGCTCTTGCATATGATGAAGCTGCTAGGGCTATGTATGGTCCTTGTGCACGCCTTAATTTTCCCCACATCTCGGATTATAGTTCCGCGATAGAATCATTGGCTGCAACTTGTTGTAGTTCATCACTGGCAACTCCTGCGACTTCGGACACTACTTCTGTATATTCAGAGGTTTGTGCTGCTGAGGATGTGAAGGAGAAACATTGTCTTGATAATATCAACAATAAGGTTCATGAAGCTTATGAATCTGCCTGCCCAACTAGCAAATTGAAGCAAGAACCGAAGGATGACCCTGCAGATCTTATGGATCCCGGGGGTGGGGAAATCGAAGATTTTAGACCAAAAGAAGCACATGATGTTGGACATGTTGATGAGGATGGGAACAAAGATCAGAATTCGATGGATTTTTCATGGATTGATGGTATTGATTTTGATAGTTTTTCTACAGATGAGCTATTTCAGGTGGATGAGCTTTTGGGGTATTTAGATAATGAACCAATGAACAGTTCTGAGTTGATGCAAGGTTTGGATTTTGGTCAAATGGATTTTCCCTGTGACAATAATCTTCAAGTTGAACCATCTTCAAGCTTTTTATATGAATTGCAAAACCCAGATGCAAAATTACTGGGAAGTTTGCCCCATATGGAACAGGCTCCATCAAGTTTTGATTTTGGATTAGATTTATTGAAATCAGAAGATACAGTGGACTATAATGGTGTTCAAGGGGAAGAGCAGAAACTTCTTAATTTGGATAATATGAACCATAATTCAGAATGGAATCCACTCAAAGAAGGATGA 1149 0.4082 MEVYDKGCGINIVTLDSSRKRKSRNRRGGPRSVAETIAKWKEYNMNLESAREDCKPRRKAPAKGSKKGCMKGKGGPQNSQCNYRGVRQRTWGKWVGEIREPNRGRRLWLGTFSTAQEAALAYDEAARAMYGPCARLNFPHISDYSSAIESLAATCCSSSLATPATSDTTSVYSEVCAAEDVKEKHCLDNINNKVHEAYESACPTSKLKQEPKDDPADLMDPGGGEIEDFRPKEAHDVGHVDEDGNKDQNSMDFSWIDGIDFDSFSTDELFQVDELLGYLDNEPMNSSELMQGLDFGQMDFPCDNNLQVEPSSSFLYELQNPDAKLLGSLPHMEQAPSSFDFGLDLLKSEDTVDYNGVQGEEQKLLNLDNMNHNSEWNPLKEG 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1392 382 ProSiteProfiles AP2/ERF domain profile. 82 139 IPR001471 GO:0003700|GO:0006355
Lal18g1392 382 Pfam AP2 domain 81 131 IPR001471 GO:0003700|GO:0006355
Lal18g1392 382 PRINTS Ethylene responsive element binding protein signature 83 94 IPR001471 GO:0003700|GO:0006355
Lal18g1392 382 PRINTS Ethylene responsive element binding protein signature 105 121 IPR001471 GO:0003700|GO:0006355
Lal18g1392 382 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 14 348 - -
Lal18g1392 382 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 14 348 - -
Lal18g1392 382 MobiDBLite consensus disorder prediction 51 82 - -
Lal18g1392 382 Gene3D AP2/ERF domain 82 141 IPR036955 GO:0003700|GO:0006355
Lal18g1392 382 SUPERFAMILY DNA-binding domain 82 140 IPR016177 GO:0003677
Lal18g1392 382 CDD AP2 81 140 IPR001471 GO:0003700|GO:0006355
Lal18g1392 382 SMART rav1_2 82 145 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1392 Lal-Chr18 16193890 16195038 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g1392 10 368 AP2-EREBP Transcription Factor Family AT2G40340 39.142 8.30e-65 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lal18g1392 AP2 4.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g1392 - K09286 lang:109340522 708.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1392 18 16193890 16195038 Lal18g1392 18 16193890 16195038 ECH