Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1391 ATGAAATGGGTTGAAGTTGAAGGTGGTGATGTTAGTGAAAAGGAGGAGCGTGAAGCAAATAAGGAAAAGCAAGAGAGTGAGAATGAATGGGCCAGAGGATTGAAAAAGCATTTGAAGAGGCTCAATGCCCCGAAGCATTGGATGCTTGACAAACTTGGTGGTGCTTTTGCTCCGAAGCCATCATCTGGACCACACAAGTCCAGGGAATGTCTCCCATTGATTCTTATCTTGCGAAACAGGTTGAAGTATGCCCTGACATACAGGGAAGTCATTGCTATTCTTATGCAGCGACATATCCTTGTTGACGGCAAAGTCAGGACTGACAAGACATATCCATCTGGTTTTATGGATGTTGTATCCATCCCTAAAACAAATGAGAACTTCCGTCTGCTTTATGACACCAAAGGTCGTTTCCGTCTGCACTCAGTTAGGGATGATGAAGCAAAGTTTAAGCTTTCCAAGGTTCGATCAGTGCGGTTTGGGGACAAGGGTATCCCATACCTCAACACCTATGATGGTCGCACTATCCGCTACCCTGACCCCGTCATCAAGGCAAATGACACCATCAAGTTGGATCTGGAGGAGAACAAGATTGTTGACTTCATCAAGTTCGATGTTGGTAATGTAGTGATGGTTACTGGTGGAAGGAATAGAGGGCGTGTTGGTGTGATCAAGAACAGGGAAAAGCATAAGGGAAGCTTTGAGACAGTTCACATCCAGGATTCTACAGGACATGAATTCGCCACTCGTATGGGCAATGTGTTCACTATTGGCAAAGGGACTAAGCCATGGATCTCTCTCCCCAAGGGCAAGGGTATTAAGCTTTCAATCATTGAGGAAGCTAGGAAGAGGATTGCTGCTCAACAGCCAGTCACTGCTTAA 882 0.4558 MKWVEVEGGDVSEKEEREANKEKQESENEWARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHILVDGKVRTDKTYPSGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDDEAKFKLSKVRSVRFGDKGIPYLNTYDGRTIRYPDPVIKANDTIKLDLEENKIVDFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETVHIQDSTGHEFATRMGNVFTIGKGTKPWISLPKGKGIKLSIIEEARKRIAAQQPVTA 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1391 293 Pfam Ribosomal family S4e 124 198 IPR013845 -
Lal18g1391 293 Coils Coil 9 29 - -
Lal18g1391 293 MobiDBLite consensus disorder prediction 1 30 - -
Lal18g1391 293 CDD KOW_RPS4 204 258 IPR041982 -
Lal18g1391 293 SMART kow_9 203 230 IPR005824 -
Lal18g1391 293 SMART s4_6 71 135 IPR002942 GO:0003723
Lal18g1391 293 Pfam S4 domain 76 119 IPR002942 GO:0003723
Lal18g1391 293 PIRSF RPS4a_RPS4e 30 270 IPR000876 GO:0003735|GO:0005840|GO:0006412
Lal18g1391 293 PANTHER 40S RIBOSOMAL PROTEIN S4 250 290 - -
Lal18g1391 293 PANTHER 40S RIBOSOMAL PROTEIN S4 30 249 - -
Lal18g1391 293 Gene3D - 151 201 IPR038237 -
Lal18g1391 293 Hamap 30S ribosomal protein S4e [rps4e]. 36 267 IPR000876 GO:0003735|GO:0005840|GO:0006412
Lal18g1391 293 Gene3D - 30 146 IPR036986 GO:0003723
Lal18g1391 293 Pfam KOW motif 206 239 IPR005824 -
Lal18g1391 293 CDD S4 80 141 - -
Lal18g1391 293 Pfam 40S ribosomal protein S4 C-terminus 241 287 IPR032277 -
Lal18g1391 293 Pfam RS4NT (NUC023) domain 32 68 IPR013843 -
Lal18g1391 293 Gene3D - 204 274 IPR014722 -
Lal18g1391 293 PANTHER 30S/40S RIBOSOMAL PROTEIN S4 30 249 IPR000876 GO:0003735|GO:0005840|GO:0006412
Lal18g1391 293 PANTHER 30S/40S RIBOSOMAL PROTEIN S4 250 290 IPR000876 GO:0003735|GO:0005840|GO:0006412
Lal18g1391 293 ProSitePatterns Ribosomal protein S4e signature. 37 51 IPR018199 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1391 Lal-Chr18 16184292 16187242 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g1391 31 289 Cytoplasmic Ribosomal Protein Gene Family AT5G58420 91.120 0.0 502
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g1391 K02987 - gmx:547645 491.886
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0225 6 1496375 1498587 Lal18g1391 18 16184292 16187242 ECH
Lal14g0711 14 8450875 8453231 Lal18g1391 18 16184292 16187242 ECH
Lal18g1391 18 16184292 16187242 Lal18g1391 18 16184292 16187242 ECH
Lal18g1391 18 16184292 16187242 Lal22g0214 22 1318899 1321025 LSH
Lal18g1391 18 16184292 16187242 Lal6g0225 6 1496375 1498587 LSH