LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal18g1386	ATGTCGTTCTTTGATTCTAGCCCATCGGATTGGCACTACGACGGAGGAGTGTTCGACAACGATGTATCAGAATTCCATGGCCGCAATTTTTCATTCTTCTTCTTCTTCTTCTCCATCTTCATTATTGTCCTCATCGCCACCGCTCTCTTCCTCTACTCCCGCCAGCTTTTATTCTTTTGGGCTTTCTCTTCATTCCAGACACCTCACGCGCCGCTCAATTCACCGTCGTCGCAAGGACTCCATCCTGAAATGATAAAGAGACTACCGATTGTATTGCATAAGGCGCCGTTGGATCAGGATAGCGCGCGTGAGTGCTGCATATGCTTGAGCGCGTTTAGAAATGGGGAGAAATTGAAGGTGTTACCGGGATGTAACCATAGCTTTCATTGCGAGTGTGTTGATAATTGGCTTCAGAATCATACTAATTGTCCTCTTTGTAGAGCTTCTCTTAAACTTCATGATCCTTCGTTTCCAACAATTCTCATTCAAGAACCACCTGTTAGACATTATTAA	513	0.4464	MSFFDSSPSDWHYDGGVFDNDVSEFHGRNFSFFFFFFSIFIIVLIATALFLYSRQLLFFWAFSSFQTPHAPLNSPSSQGLHPEMIKRLPIVLHKAPLDQDSARECCICLSAFRNGEKLKVLPGCNHSFHCECVDNWLQNHTNCPLCRASLKLHDPSFPTILIQEPPVRHY	170

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal18g1386	170	ProSiteProfiles	Zinc finger RING-type profile.	105	147	IPR001841	-
	Lal18g1386	170	Pfam	Ring finger domain	104	147	IPR001841	-
	Lal18g1386	170	PANTHER	RING-H2 FINGER PROTEIN ATL51-RELATED	5	154	IPR044675	-
	Lal18g1386	170	SMART	ring_2	105	146	IPR001841	-
	Lal18g1386	170	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	68	152	IPR013083	-
	Lal18g1386	170	SUPERFAMILY	RING/U-box	88	156	-	-
	Lal18g1386	170	PANTHER	RING-H2 FINGER PROTEIN ATL66	5	154	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal18g1386	Lal-Chr18	16157906	16158418	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal18g1386	11	156	C3H Transcription Factor Family	AT3G11110	37.162	2.69e-23	88.6

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal18g1386	-		-	gmx:100794554	167.162

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lal17g1579	17	17243116	17243652	Lal18g1386	18	16157906	16158418	PCT
	Lal18g1386	18	16157906	16158418	Lal17g1579	17	17243116	17243652	PCT