Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1384 ATGATTTCTATTGTGAATATGGAAAGTTACTACAATTCTGGTTGGCCTTTATGTACCAATTGGACTCAAAATACTCAATGCAATTCTGCACCAAATAGTGATCAATCTCCTCTTTTAGTCCCAACACAAACAATGCCTCATGCCTCTGACTTTCTTCAATCTAGTGAGTACCTTTCATGGCCTTTACCAATTGAAGAGGCTGCAGAACATAGAGCTGCAAGTGCTTCCAATAACCACAGCCAAGCCGAGAAAAGGCGCAGGGACAGGATCAATGCACAGCTTGCAACCCTCAGAAAACTGATTCCAAAGTCTGATAAGATGGACAAAGCAGCATTACTAGGGAGTGTTGTAGAGCATGTTAAAGATCTAAAGCGAAAAGCCATGGATATGAGCAAAGCCATTACAGTTCCAACTGAAATTGATGAAGTAACAATTGACTATTACCCTGATGCTCAAGATGAAAGCTACACTAAGGTAAACATATTCAAAGATAATGTTACCATCAAAGCTTCTGTTTGTTGCGACGATCGACCGGAACTGTTCTCTGAACTCATCCAAGTCCTCAAAGGGTTGAGACTCACGACAGTTAAAGCCGACATAGCGAGTTCCGGCGGCAGAATCAAAAGCATATTGGTGCTTTGCTTAAGGGATAGTGAAGAGGGTAGTGTTTGCCTTACAACTCTCAAACAATCCCTTAAATCAGCTGTGAACAAAATTGCTTCACTATCTACAGCATCAAATTATCCTACTAGAAGTAAGAGGCAGAGGTTCTTCTTGCCTTCACATTGCTTACAATAA 798 0.4098 MISIVNMESYYNSGWPLCTNWTQNTQCNSAPNSDQSPLLVPTQTMPHASDFLQSSEYLSWPLPIEEAAEHRAASASNNHSQAEKRRRDRINAQLATLRKLIPKSDKMDKAALLGSVVEHVKDLKRKAMDMSKAITVPTEIDEVTIDYYPDAQDESYTKVNIFKDNVTIKASVCCDDRPELFSELIQVLKGLRLTTVKADIASSGGRIKSILVLCLRDSEEGSVCLTTLKQSLKSAVNKIASLSTASNYPTRSKRQRFFLPSHCLQ 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1384 265 Coils Coil 65 85 - -
Lal18g1384 265 CDD bHLH_AtAIG1_like 69 146 - -
Lal18g1384 265 Pfam Helix-loop-helix DNA-binding domain 77 123 IPR011598 GO:0046983
Lal18g1384 265 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 75 130 IPR036638 GO:0046983
Lal18g1384 265 Gene3D - 68 133 IPR036638 GO:0046983
Lal18g1384 265 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 74 123 IPR011598 GO:0046983
Lal18g1384 265 SMART finulus 80 129 IPR011598 GO:0046983
Lal18g1384 265 PANTHER TRANSCRIPTION FACTOR BHLH30 36 263 IPR045847 GO:0003700|GO:0006355
Lal18g1384 265 PANTHER TRANSCRIPTION FACTOR BHLH51 36 263 - -
Lal18g1384 265 CDD ACT_UUR-ACR-like 171 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1384 Lal-Chr18 16146362 16148408 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g1384 70 262 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 48.500 9.19e-46 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal18g1384 HLH 7.9e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g1384 - - gmx:100787169 357.451
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1384 18 16146362 16148408 Lal18g1384 18 16146362 16148408 ECH
Lal17g1578 17 17234466 17235964 Lal18g1384 18 16146362 16148408 PCT
Lal18g1384 18 16146362 16148408 Lal17g1578 17 17234466 17235964 PCT