Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1377 ATGTGCAGTGGTTCAAAAAGCAAACTTTCTACCTCAAATCAAGTAATGGAAAGTGAGTCTCAGAAGATTTTGCTTGAATTGTCTGCGTTTGATGATGTTGAAGCTTTCAAAAGAGAAGTGGAAGAGCAGGGTTTGGATGTTAATGAGGCAGAGTTTTGGTATTGTAGAAGAATTGGATCAAAGAAGATGGGGTATGAAAAGAGGACCCCCCTCATGATTGCATCTTTGTTTGGAAGCACAAGGGTGGTTAAGTATATTACTGAGATCGGCATGGTTGATGTGAACAAGGCGTGTGGTTCTGATAGGGCCACTGCGCTCCATTGCGCTGTTGCTGGGGGTTCTGAATCCTCACTTGAGATTGTCAAGCTCTTGCTTGATACCGGAGCAGATGCTGATTGCCTTGATGCTAGTGGAAACAAGCCTGTTAATCTGATTGCTCCTGCCTTTAATGTTTCGTCCAATTCCCGAAGGAAGGCCATGGAGATGTTTCTCGGAAGAGGGGAAGGCGATCAAATCTTATATGAGATGGAGCAAGTACCGTCTGAGAAAAAAGAAGGAGCTGATAAGAAAGAATATCCTGTTGATATATCGTTGCCTGATATAAACAATGGTGTATATGGAACAGATGATTTTAGGATGTATAGCTTCAAAGTGAAGCTGTGTTCAAGGGCTTATTCCCATGACTGGACTGAGTGTCCATTTGTTCATCCAGGGGAGAATGCAAGGAGGAGAGACCCACATAAATACCCTTATAGCTGTGTTCCTTGCCCAGAGTTTCGCAAAGGGACCTGCCAGAAGGGTGATTCCTGTGAGTATGCACATGGTGTTTTTGAGTCCTGGCTACATCCTGCGCAATACCGGACAAGGCTTTGCAAGGATGAGACTGGCTGCAATAGAAAAGTCTGCTTCTTTGCTCACAAACCTGAAGAGTTGCGCCCGGTGTATGCTTCCACCGGCTCAGCTATGCCATCACCAAAATCTTATTCAGCTAGTGCATTTGACATGACATCAATGAGTCCATTGTCTCTTAGTTCCTCATTGCCTATGCCAACTGTTTCGACACCACCAATGTCTCCTTTGGCAGCTTCTTCATCTGCCAAGAATGGAAACTTGTGGCAGAACAAAATCAACTTCACTCCACCATCATTGCAGCTCCCAGGTAGCCGGCTGAAGGCTGCTTTGAGTGCCAGGGATCTTGATCTTGAGATGGAAATGCTCGGTATAGGAGGTCCTAGCTATGCTCGTCAACAGCAGCAACAACAGCAACAACAATTGGTAGATGAGATCGCCAGGATCTCTTCCCCATCTTTCCGAAGCCGAATGGGTGATTTGAATCCAACTAACCTTGATGAACTCTTAGCATCTGCTGATGCTTCTGTATTATCTCAGTTACATGGACTTTCTGTCCAACCTTCAACACCAACACAGTTGCAAACTCAAAACTCGCTTCAGATGCGCCAAAACATGAACCACCTTCGCGCAAGTTACCCATCCAACAACATGCCTTCATCTCCGGTGTATAAATCCTCACCATATGGGTTTGATTCATCGGCTGCTGTCGCAGCAGCAATGATGAATTCTAGGTCTGCTGGCTTCGCGAAGCGAAGCCAGAGTTTCATAGATCGTGGTGCTGCAACAAACCATCCTGGGCTGTCTTCACCTTCCAACCCCTCCTGTAGGATGTCCTCTGCCCTTTCAGATTGGGGTTCCCCGACCGGGAAGCTGGACTGGGGTGTAAACGGAGATGAACTAAGCAAGCTGAGGAAATCTGCTTCATTCGGGTTCAGAAACAACGGCGTATCATCCCCTAAGGCACAGTCAGAACATGTTGAGCCAGATGTGTCATGGGTTCATTCATTGGTTAGAGATGAGAGGTCTGAGAGATTCGGCGCCGAGAAGCAGCATCAACATCAGCAATATGATATCAGTAAAGAGATGCTTCCACCATGGGTGGAGCAACTGTACATAGAGCAGCAGAAGCAAATGGTAGCATAA 1995 0.4632 MCSGSKSKLSTSNQVMESESQKILLELSAFDDVEAFKREVEEQGLDVNEAEFWYCRRIGSKKMGYEKRTPLMIASLFGSTRVVKYITEIGMVDVNKACGSDRATALHCAVAGGSESSLEIVKLLLDTGADADCLDASGNKPVNLIAPAFNVSSNSRRKAMEMFLGRGEGDQILYEMEQVPSEKKEGADKKEYPVDISLPDINNGVYGTDDFRMYSFKVKLCSRAYSHDWTECPFVHPGENARRRDPHKYPYSCVPCPEFRKGTCQKGDSCEYAHGVFESWLHPAQYRTRLCKDETGCNRKVCFFAHKPEELRPVYASTGSAMPSPKSYSASAFDMTSMSPLSLSSSLPMPTVSTPPMSPLAASSSAKNGNLWQNKINFTPPSLQLPGSRLKAALSARDLDLEMEMLGIGGPSYARQQQQQQQQQLVDEIARISSPSFRSRMGDLNPTNLDELLASADASVLSQLHGLSVQPSTPTQLQTQNSLQMRQNMNHLRASYPSNNMPSSPVYKSSPYGFDSSAAVAAAMMNSRSAGFAKRSQSFIDRGAATNHPGLSSPSNPSCRMSSALSDWGSPTGKLDWGVNGDELSKLRKSASFGFRNNGVSSPKAQSEHVEPDVSWVHSLVRDERSERFGAEKQHQHQQYDISKEMLPPWVEQLYIEQQKQMVA 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1377 664 Gene3D - 3 177 IPR036770 -
Lal18g1377 664 Pfam Ankyrin repeats (3 copies) 64 132 IPR002110 GO:0005515
Lal18g1377 664 SUPERFAMILY Ankyrin repeat 24 155 IPR036770 -
Lal18g1377 664 Gene3D - 251 313 - -
Lal18g1377 664 MobiDBLite consensus disorder prediction 543 565 - -
Lal18g1377 664 ProSiteProfiles Ankyrin repeat profile. 101 136 IPR002110 GO:0005515
Lal18g1377 664 SMART ANK_2a 66 96 IPR002110 GO:0005515
Lal18g1377 664 SMART ANK_2a 101 133 IPR002110 GO:0005515
Lal18g1377 664 ProSiteProfiles Zinc finger C3H1-type profile. 250 277 IPR000571 GO:0046872
Lal18g1377 664 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 255 275 IPR000571 GO:0046872
Lal18g1377 664 ProSiteProfiles Ankyrin repeat region circular profile. 101 135 - -
Lal18g1377 664 SMART c3hfinal6 285 308 IPR000571 GO:0046872
Lal18g1377 664 SMART c3hfinal6 250 276 IPR000571 GO:0046872
Lal18g1377 664 PANTHER UNKEMPT FAMILY MEMBER 14 662 IPR045234 -
Lal18g1377 664 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 29 14 662 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1377 Lal-Chr18 16093090 16095084 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g1377 24 658 C2H2 Transcription Factor Family AT5G12850 39.403 1.07e-138 420
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lal18g1377 Ank_2 9.2e-08 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g1377 - - gmx:100783376 975.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1377 18 16093090 16095084 Lal18g1377 18 16093090 16095084 ECH
Lal18g1377 18 16093090 16095084 Lal22g0219 22 1342800 1344788 LSH