Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1376 ATGGCTGTGCCAAACAATGTAGAAACAGTGATAGAGTTTCTAAGGAAGAACGGTTTTTCAGAAGCTGAGTCAGCACTCAAACAAGATATCATAGAGAATGGTGGAAGAGATTATTTGACATCCTCTGACTATGACAAATTCTACTTTCCTATGCTCCCTCCCCTGCCGCCGGTTAAACTCCGATCATCGGAACCTCCCGGAAGAATCTTCAGTGTTTCCTCCGATGATGATTTTTTTAGCATAGGTTCATTTATTTCTCGTGTCTCTTCTTCTTCAGAATTTATCAATCCATATGGAATCCGCGCCATATCTCAGATTCGGAATGATTCCGAACATTCACCTGATATGTTATCTCAATTCGGCACAGCACGTGAATGTCGCAATTTTGATATGCAAAGTGAATCATATTGGTATAATGAAAAGGATGATGAGTGCTTCATGGCCCCTAATTTTGAAGGGCCGGATGCCTTTGGGTGTCGAAGTGAGGATAAGTTTGTCACGACAGCAAAAATTGAGAATCAATATGACCATTCTCTGGGTCTCAATCACAACTACGAAGAATCACAATTAGAAGGAAATGGTGGTTACACGGACAAGAAATGCCTTTATAATCATTCATCTTTAGGGGATGGAAATGTAACTTTTTCAGAAAGTTATTGTCATATGGATAATAAAGACCAGATTAATGAAGATTCTACAAGCTTCAACTACCCTAATTTGAAAGAAATCAATCTTAATGATTTTCATAAGAAGGTTGCTGGGGATATTACCTCTTTTAATTCTGCCCCACAGCAGACTGTGAATCAAAATCTTGAATCCTACACTAAAAATGACAGCAGTGAGGGGTACAAGGGTCCTTACGACTTAACTAACAAAGTTGCAGGAACCGATCCATCAAATGCATGTGAAGCTCGAGATGGTGGAGAACTTGCTGAAGAGTGCCAAGATCCAAAAATCATAGCATATGGAGAGGATACTACTACTGATGATGAGCCCTTAAAGTACATTCAAGATGATGAACATGAAGTATTTGACCTGAGAATTATACATAGAAAGAACAGGACTGGATATGAAGAAAACAAGGAAATGCCAATTGTGCTAAATACAATCATAGCTGGCAGGTACTATGTAACAGAATATCTTGGTTCAGCTGCCTTCAGTAGGGTTGTTCAGGCATATGATCTTCAGCGAGGAATAGATGTTTGCCTGAAGATTATTAACAACGACAAAGACTTTTTTGATCAAAGCTTAGATGAAATCAGGCTTCTGAAACTTGTTAATAAGCATGACCCGGCAGATCAATGCCACATTCTGCGCCTCTATGACTATTTCTACTATCAGGAGCATTTATTCCTTGTAACCGAGCTTCTGCGAGCAAACTTATATGAATATCAGAAATTCAACCGAGAATCTGGAGGGGAAGCATATTTTACATTAAACAGGTTACAGATCATTACTCGTCAATGTTTGGAGGCATTGCAATACTTGCATAACTTGGGAATTATGCACTGTGACTTGAAGCCAGAAAATATTCTTATCAAAAGCTACAAAAGATGCAAAGTAAAGGTTATTGATCTTGGAAGCAGCTGCTTTAAAACAGACAATCTGTGCCTATATGTACAATCCCGATCTTATAGAGCCCCCGAAGTTATGTTAGGCCTTGAATATGATGAAAAGATTGACATATGGTCTCTTGGCTGTATCTTGGCGGAGCTATGCTCTGGTGAAGTGCTCTTTCCAAATGATGCAATTGTGATGATTCTCGCACGCATGATTGGAATCTTGGGCCCTATTGACCTGGAGATGTTGGTGAAAGGGCAGGAAACACACAAGTACTTCACCGAAGAATACGATATTTATTATGTAAACGAGGAAAATAATCAGCTTGAGTACATAATTCCAGAGGAGTTATCATTAGAACAACACCTACAAGTTACAGATACTATGTTTATAGATTTTGTCAAATACTTGCTTAACATCAATCCCAAAAGAAGGCCTACTGCAACACAAGCATTAAAGCATCCATGGATTTCATATATGTACAAGTCCAAGTAG 2055 0.3883 MAVPNNVETVIEFLRKNGFSEAESALKQDIIENGGRDYLTSSDYDKFYFPMLPPLPPVKLRSSEPPGRIFSVSSDDDFFSIGSFISRVSSSSEFINPYGIRAISQIRNDSEHSPDMLSQFGTARECRNFDMQSESYWYNEKDDECFMAPNFEGPDAFGCRSEDKFVTTAKIENQYDHSLGLNHNYEESQLEGNGGYTDKKCLYNHSSLGDGNVTFSESYCHMDNKDQINEDSTSFNYPNLKEINLNDFHKKVAGDITSFNSAPQQTVNQNLESYTKNDSSEGYKGPYDLTNKVAGTDPSNACEARDGGELAEECQDPKIIAYGEDTTTDDEPLKYIQDDEHEVFDLRIIHRKNRTGYEENKEMPIVLNTIIAGRYYVTEYLGSAAFSRVVQAYDLQRGIDVCLKIINNDKDFFDQSLDEIRLLKLVNKHDPADQCHILRLYDYFYYQEHLFLVTELLRANLYEYQKFNRESGGEAYFTLNRLQIITRQCLEALQYLHNLGIMHCDLKPENILIKSYKRCKVKVIDLGSSCFKTDNLCLYVQSRSYRAPEVMLGLEYDEKIDIWSLGCILAELCSGEVLFPNDAIVMILARMIGILGPIDLEMLVKGQETHKYFTEEYDIYYVNEENNQLEYIIPEELSLEQHLQVTDTMFIDFVKYLLNINPKRRPTATQALKHPWISYMYKSK 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1376 684 Pfam Protein kinase domain 377 677 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal18g1376 684 Gene3D Phosphorylase Kinase; domain 1 370 456 - -
Lal18g1376 684 SUPERFAMILY Protein kinase-like (PK-like) 364 680 IPR011009 -
Lal18g1376 684 SMART serkin_6 375 677 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal18g1376 684 Gene3D Transferase(Phosphotransferase) domain 1 429 677 - -
Lal18g1376 684 CDD PKc_DYRK_like 375 677 - -
Lal18g1376 684 ProSiteProfiles Protein kinase domain profile. 375 677 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal18g1376 684 PANTHER HYPOTHETICAL SER-THR PROTEIN KINASE-RELATED 8 681 - -
Lal18g1376 684 PANTHER DUAL SPECIFICITY PROTEIN KINASE 8 681 - -
Lal18g1376 684 ProSitePatterns Serine/Threonine protein kinases active-site signature. 501 513 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1376 Lal-Chr18 16074365 16079341 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g1376 372 672 MAP Kinase Gene Family AT5G19010 31.153 2.93e-33 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_DYRK-PRP4 Lal18g1376 Pkinase 3e-51 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1376 18 16074365 16079341 Lal18g1376 18 16074365 16079341 ECH
Lal18g1376 18 16074365 16079341 Lal22g0221 22 1360074 1364279 LSH