Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1363 ATGGAGGGAAAGGAACAAGATGTATCATTAGGAGCCAACAAGTTCCCAGAGAGGCAACCTCTAGGTATAGCGGCTCAGAGCCAAGACGAACCCAAGGACTACCAGGAACCACCACCTGCACCATTCTTTGAACCATCTGAACTCACATCTTGGTCCTTTTATAGAGCTGGTATAGCTGAGTTCGTTGCCACTTTTCTCTTCCTCTACATCACTATCTTAACCGTCTTTGGCGTTCAGAGGTCCCCAACTAAGTGTCAATCTGTTGGTATCCAAGGTATTGCTTGGGCTTTTGGTGGCATGATCTTCGCCCTTGTCTACTGCACTGCTGGCATCTCAGGGGGTCATATAAACCCGGCGGTGACATTTGGATTGTTCTTGGCTAGGAAATTGTCTTTGACAAGGGCAGTGTTCTACATAGTGATGCAGGTGTTGGGTGCTATTGTTGGCGCTGGTGTGGTGAAGGGTTTCGAGGGAAAACATAGGTATACCCAATATAACGGTGGTGCTAACTTTGTTGCCCCTGGATACACCAAAGGTGACGGACTTGGTGCTGAGATTGTTGGCACCTTTGTTCTTGTCTATACCGTTTTCTCAGCCACCGATGCCAAACGTAGCGCTAGAGACTCTCACGTCCCTATTTTGGCACCCTTGCCTATTGGGTTCGCTGTATTCTTGGTACACTTGGCCACCATCCCCATCACCGGAACCGGTATCAACCCTGCTCGTAGTCTTGGTGCTGCTATCATCTTCAACAAAGACCTCGGCTGGAATGATCACGTAATGGATCTTCTGGGTGGGACCATTTATTGGAGCAGCTCTTGCAGCTCTATACCACCAAGTCGTGATCAGAGCCATTCCCTTCAAGTCCAAGTGATTGAATCAAACGATTCATCTTCAATCAATGTTTGGAAGAACATCAAAATCAAACCAGCATATTTGTGGATTTTCATTTCATCACTATCCTTAAAGTCATGTGTATTATGTACTTAA 990 0.4657 MEGKEQDVSLGANKFPERQPLGIAAQSQDEPKDYQEPPPAPFFEPSELTSWSFYRAGIAEFVATFLFLYITILTVFGVQRSPTKCQSVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYIVMQVLGAIVGAGVVKGFEGKHRYTQYNGGANFVAPGYTKGDGLGAEIVGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDLGWNDHVMDLLGGTIYWSSSCSSIPPSRDQSHSLQVQVIESNDSSSINVWKNIKIKPAYLWIFISSLSLKSCVLCT 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1363 329 ProSitePatterns MIP family signature. 115 123 IPR022357 -
Lal18g1363 329 SUPERFAMILY Aquaporin-like 47 261 IPR023271 -
Lal18g1363 329 CDD MIP 55 268 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal18g1363 329 Pfam Major intrinsic protein 47 265 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal18g1363 329 PANTHER AQUAPORIN PIP1-2 ISOFORM X2 1 268 - -
Lal18g1363 329 PRINTS Major intrinsic protein family signature 55 74 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal18g1363 329 PRINTS Major intrinsic protein family signature 97 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal18g1363 329 PRINTS Major intrinsic protein family signature 134 153 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal18g1363 329 PRINTS Major intrinsic protein family signature 184 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal18g1363 329 PRINTS Major intrinsic protein family signature 220 242 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal18g1363 329 TIGRFAM MIP: MIP family channel proteins 59 265 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal18g1363 329 MobiDBLite consensus disorder prediction 1 39 - -
Lal18g1363 329 Gene3D Glycerol uptake facilitator protein. 40 275 IPR023271 -
Lal18g1363 329 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 268 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1363 Lal-Chr18 15997511 16000192 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g1363 1 293 Major Intrinsic Protein MIP AT2G45960 79.863 1.74e-170 474
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g1363 K09872 - gmx:100791447 471.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1363 18 15997511 16000192 Lal6g0249 6 1622631 1624432 LSH
Lal18g1363 18 15997511 16000192 Lal18g1363 18 15997511 16000192 PCT
Lal18g1363 18 15997511 16000192 Lal6g0249 6 1622631 1624432 PCT
Lal6g0249 6 1622631 1624432 Lal18g1363 18 15997511 16000192 PCT