LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal18g1354	ATGGTTAAGGGTAGACAAGGAGAGCGTGTCAGACTTTATGTCAGAGGAACAATCCTTGGATACAAGAGGTCCAAGTCAAATCAATACCCAAACACTTCTTTGCTTCAGATTGAGGGAGTAAACACCAAGGAAGAGGTTGCATGGTATGCTGGAAAGCGCATGGCATACATTTACAAAGCGAAGGTAAAGACAAATGGAAGCCACTATCGCTGTATCTGGGGTAAGGTTACCAGGCCACATGGTAACAGTGGCATTGTTCGTGCCAAGTTCAAGTCCAACCTGCCACCAAAATCAATGAGTCTCATAACATGTGGGTGCCTATAG	324	0.4506	MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLLQIEGVNTKEEVAWYAGKRMAYIYKAKVKTNGSHYRCIWGKVTRPHGNSGIVRAKFKSNLPPKSMSLITCGCL	107

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal18g1354	107	PANTHER	60S RIBOSOMAL PROTEIN L35A-1	1	100	-	-
	Lal18g1354	107	PANTHER	60S RIBOSOMAL PROTEIN L35A	1	100	IPR001780	GO:0003735\|GO:0005840\|GO:0006412
	Lal18g1354	107	SUPERFAMILY	Translation proteins	12	99	IPR009000	-
	Lal18g1354	107	Hamap	50S ribosomal protein L35Ae [rpl35ae].	14	106	IPR001780	GO:0003735\|GO:0005840\|GO:0006412
	Lal18g1354	107	Pfam	Ribosomal protein L35Ae	12	100	IPR001780	GO:0003735\|GO:0005840\|GO:0006412
	Lal18g1354	107	Gene3D	translation elongation factor selb, chain A, domain 4	6	102	IPR038661	-
	Lal18g1354	107	ProSitePatterns	Ribosomal protein L35Ae signature.	74	95	IPR018266	GO:0003735\|GO:0005840\|GO:0006412

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal18g1354	Lal-Chr18	15942717	15945685	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal18g1354	1	99	Cytoplasmic Ribosomal Protein Gene Family	AT1G74270	91.919	3.53e-65	191

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal18g1354	K02917		-	pop:7458094	202.986

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lal6g0257	6	1676625	1686443	Lal18g1354	18	15942717	15945685	ECH
	Lal18g1354	18	15942717	15945685	Lal18g1354	18	15942717	15945685	ECH
	Lal18g1354	18	15942717	15945685	Lal6g0257	6	1676625	1686443	LSH