Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1352 ATGACAGTGGTCGGAGAAGGTACAATGGCGGGAAAAGTGAAGGGACCGTGGTCACCAGATGAAGATGCGGTTCTCAGCCGATTTGTGGCGCAGTTCGGGGCAAGGAACTGGACCATGATCGTACGGCGAGTGCCTGGGAGGTCCGGCAAGTCTTGCCGTCTCCGGTGGTGTAATCAGATTGACCCTTGCGTCATACGCAAGCGCCCTTCACTGACTTATAATTTCAGCCCACGCAATCCATGGAAACAAATGGGTAGAAATTGCAAGGCCTTTTTTCTGGGTAGAACAGATAATGCCATCAAGAACCAATGGAATTCTACTCTAAAGCGCAGGCATGTGGAATTGGGAACACATTTCCGAGCACATGCCGATGTGATAGAAGATGGTAGCTTTGAGAAAGCAAAGGCATCTTCTGAAGAAACCATGTCAGTTGGGGATATCAATTCATTGAATCCTCCAGAAGTTTGA 468 0.4872 MTVVGEGTMAGKVKGPWSPDEDAVLSRFVAQFGARNWTMIVRRVPGRSGKSCRLRWCNQIDPCVIRKRPSLTYNFSPRNPWKQMGRNCKAFFLGRTDNAIKNQWNSTLKRRHVELGTHFRAHADVIEDGSFEKAKASSEETMSVGDINSLNPPEV 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1352 155 ProSiteProfiles Myb-like domain profile. 14 60 IPR001005 -
Lal18g1352 155 Gene3D - 70 140 - -
Lal18g1352 155 PANTHER MYB PROTEIN-RELATED 93 154 - -
Lal18g1352 155 PANTHER MYB PROTEIN-RELATED 6 67 - -
Lal18g1352 155 MobiDBLite consensus disorder prediction 141 155 - -
Lal18g1352 155 SMART sant 13 62 IPR001005 -
Lal18g1352 155 MobiDBLite consensus disorder prediction 136 155 - -
Lal18g1352 155 Pfam Myb-like DNA-binding domain 14 58 IPR001005 -
Lal18g1352 155 SUPERFAMILY Homeodomain-like 14 109 IPR009057 -
Lal18g1352 155 Gene3D - 13 65 - -
Lal18g1352 155 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 64 IPR017930 -
Lal18g1352 155 CDD SANT 16 58 IPR001005 -
Lal18g1352 155 PANTHER MYB TRANSCRIPTION FACTOR-LIKE PROTEIN 93 154 - -
Lal18g1352 155 PANTHER MYB TRANSCRIPTION FACTOR-LIKE PROTEIN 6 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1352 Lal-Chr18 15926748 15929122 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g1352 12 155 MYB Transcription Factor Family AT3G55730 43.750 7.47e-37 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lal18g1352 Myb_DNA-binding 3.6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g1352 K09422 - gmx:100781228 197.208