Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1350 ATGTTGGTAACTGAGGACAAGTCCCATGTTGTTGTTGTTAACATAGACAATGTCTGTGAAGGTTGTTGTTCTGATGAGGAGCAAAGATCCACCCTGGATTCTTGTCCAGAGATTGTTGAAAAAGTGAGAAGTTCCTCTGCATCAGAGTGTTCAATGGAGTTGGATCTGGAAGCAGGTACAGTTTCTGATGTCAAGGTACATTTGGCTAAGGTTGAGAGAGATTGTAGGATTTGTCATCTTAGCATGGATATGACAAACCATGAATCTGGGACCCCCATTGAGCTTGGATGTTCTTGCAAGGATGATTTAGCTGCTGCTCATAAACACTGTGCTGAGACTTGGTTCAAGGTCAAGGGTAATAAAACTTGTGAAATCTGTGGATCAATTGCGCTCAACGTAGCCGGTGCAAATGAAGTTCAAATTACAGAACAATGGAATGAAGTAAATGATGCTTCCATGGTACCAAATGTACCTTCACCCCCGGCCGAAACTCGAAGTTTCTGGAAGGGTCACCGGTTTCTGAATTTCCTGCTAGCTTGTATGGTCTTTGCCTTTGTCATATCCTGGCTTTTTCACTTCAATGTGCCCTCATGA 594 0.431 MLVTEDKSHVVVVNIDNVCEGCCSDEEQRSTLDSCPEIVEKVRSSSASECSMELDLEAGTVSDVKVHLAKVERDCRICHLSMDMTNHESGTPIELGCSCKDDLAAAHKHCAETWFKVKGNKTCEICGSIALNVAGANEVQITEQWNEVNDASMVPNVPSPPAETRSFWKGHRFLNFLLACMVFAFVISWLFHFNVPS 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1350 197 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 60 135 IPR013083 -
Lal18g1350 197 Pfam RING-variant domain 75 126 IPR011016 GO:0008270
Lal18g1350 197 SMART ringv_2 74 127 IPR011016 GO:0008270
Lal18g1350 197 ProSiteProfiles Zinc finger RING-CH-type profile. 67 133 IPR011016 GO:0008270
Lal18g1350 197 SUPERFAMILY RING/U-box 72 128 - -
Lal18g1350 197 PANTHER ZINC FINGER, RING-CH-TYPE 19 197 - -
Lal18g1350 197 PANTHER OS01G0850200 PROTEIN 19 197 - -
Lal18g1350 197 CDD RING_CH-C4HC3_MARCH 75 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1350 Lal-Chr18 15923461 15925499 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g1350 11 197 C3H Transcription Factor Family AT5G05830 61.658 3.57e-75 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g1350 - - gmx:100818979 298.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g1638 9 18783854 18787370 Lal18g1350 18 15923461 15925499 ECH
Lal2g1884 2 21128523 21131437 Lal18g1350 18 15923461 15925499 ECH
Lal18g1350 18 15923461 15925499 Lal18g1350 18 15923461 15925499 ECH