Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1343 ATGAAGGCATTAATTCTGGTCGGAGGGTTTGGGACAAGGTTGAGGCCATTGACACTAAGTTTCCCTAAGCCTCTTGTTGATTTTGCTAACAAGCCAATGATTCTTCATCAGATTGAGGCTCTTAAGGCCATTGGAGTTACTGAAGTCGTACTAGCTATCAATTACCAACCAGAGGTTATGTTAAATTTCTTGAAGGATTTTGAAGCAAAGCTTGGCATCAAGATCACTTGTTCTCGAGAAACTGAACCACTGGGAACTGCTGGGCCCCTGGCCCTTGCCAGGGATAAGCTGGTAGATGATTCGGGAGTGCCATTTTTTGTTCTCAACAGTGACGTTATCAGTGAGTACCCACTGAAAGAAATGATCAAGTTCCACAAAGTCCGTGGAGGAGAGGCTTCTATAATGGTGACAAAGGTTGATGAACCATCAAAATATGGTGTAGTTGTGATGGAGGAGACTACAGGGCAGGTTGAGAAATTTGTCGAAAAACCAAAGTTGTTTGTTGGTAACAAAATCAATGCCGGAATCTACCTGTTGAACCCTTCTGTTTTGGATCGAATTGAACTGAGACCCACTTCTATTGAGAAAGAGGTTTTTCCGAAGATTGCAGCAGAGAAAATGCTATATGCAATGGTCCTGCCTGGATTCTGGATGGACATTGGACAACCAAGGGACTATATTTCTGGCCTGACACTCTACTTAGACTCTTTAAAGAAAATGTCATCTTCAAAGTTAGCAAGTGGTGCTCATATTGTTGGGAATGTCATTGTAGATGAGACGGCCAAAATCGGTGAGGGTTGTCTCATTGGACCTGATGTTGCTATTGGTCCTGGCTGCATTATTGAAGCAGGAGTTAGGGTCTCTCACTGCACAATAATGCGAGGAGCTCGGATTAAAAAGCATGCTTGTATATCTAGCAGTATCATTGGGTGGCATTCTACTGTCGGACAATGGGCTCGAGTAGAGAATATGACTATGCTTGGAGAAGATGTCCATGTATGTGATGAAATTTACAGCAATGGTGGTGTGGTTTTGCCTCACAAGGAGATCAACACAAGTATTCTCAAGCCAGAGATTGTCATGTGA 1086 0.4309 MKALILVGGFGTRLRPLTLSFPKPLVDFANKPMILHQIEALKAIGVTEVVLAINYQPEVMLNFLKDFEAKLGIKITCSRETEPLGTAGPLALARDKLVDDSGVPFFVLNSDVISEYPLKEMIKFHKVRGGEASIMVTKVDEPSKYGVVVMEETTGQVEKFVEKPKLFVGNKINAGIYLLNPSVLDRIELRPTSIEKEVFPKIAAEKMLYAMVLPGFWMDIGQPRDYISGLTLYLDSLKKMSSSKLASGAHIVGNVIVDETAKIGEGCLIGPDVAIGPGCIIEAGVRVSHCTIMRGARIKKHACISSSIIGWHSTVGQWARVENMTMLGEDVHVCDEIYSNGGVVLPHKEINTSILKPEIVM 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1343 361 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE FAMILY PROTEIN-RELATED 1 361 - -
Lal18g1343 361 SUPERFAMILY Nucleotide-diphospho-sugar transferases 1 312 IPR029044 -
Lal18g1343 361 Gene3D Hexapeptide repeat proteins 235 356 - -
Lal18g1343 361 Pfam Nucleotidyl transferase 2 229 IPR005835 GO:0009058|GO:0016779
Lal18g1343 361 Pfam Bacterial transferase hexapeptide (six repeats) 261 292 IPR001451 -
Lal18g1343 361 PANTHER SUGAR-1-PHOSPHATE GUANYL TRANSFERASE 1 361 - -
Lal18g1343 361 CDD M1P_guanylylT_B_like_N 1 234 IPR045233 GO:0004475|GO:0005525|GO:0009298
Lal18g1343 361 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 1 232 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1343 Lal-Chr18 15867091 15869659 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g1343 1 185 Eukaryotic Initiation Factors Gene Family AT4G18300 24.378 4.31e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g1343 K00966 - gmx:100808375 657.521
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1343 18 15867091 15869659 Lal18g1343 18 15867091 15869659 ECH
Lal3g0557 3 4207679 4210425 Lal18g1343 18 15867091 15869659 LSH
Lal5g1158 5 14309917 14316096 Lal18g1343 18 15867091 15869659 LSH
Lal18g1343 18 15867091 15869659 Lal22g0257 22 1633173 1636516 LSH
Lal18g1343 18 15867091 15869659 Lal6g0268 6 1741787 1745133 LSH
Lal3g0557 3 4207679 4210425 Lal18g1343 18 15867091 15869659 PCT
Lal5g1158 5 14309917 14316096 Lal18g1343 18 15867091 15869659 PCT
Lal18g1343 18 15867091 15869659 Lal18g1343 18 15867091 15869659 PCT
Lal18g1343 18 15867091 15869659 Lal22g0257 22 1633173 1636516 PCT
Lal18g1343 18 15867091 15869659 Lal6g0268 6 1741787 1745133 PCT
Lal18g1343 18 15867091 15869659 Lal3g0557 3 4207679 4210425 PCT
Lal18g1343 18 15867091 15869659 Lal5g1158 5 14309917 14316096 PCT
Lal22g0257 22 1633173 1636516 Lal18g1343 18 15867091 15869659 PCT
Lal6g0268 6 1741787 1745133 Lal18g1343 18 15867091 15869659 PCT