Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1339 ATGATGGAGGAATCAGATTACTTGATGTGGATGAAGAGAAAACAATTCTTGAAGTCACACCTCCATGCAGATGGAGATGGCAGCAGAAACAATTACTACTACTCATCATGGGAAGAAGAGAGAGCCTTTGCAGAAGATGCTGGTAGGGTACTTGGTGGGAGCATGTGGCCTCCAAGATCATACTCTTGTACTTTCTGTAAAAGAGAGTTTAGGTCTGCTCAAGCACTTGGAGGTCACATGAATGTTCACAGAAGGGACAGGGCTAAGCTTAAACAAAATCTTAGCCCTAATAATGATCAAACCCTTCTTCAACTTGATCATCACAAAAATGATTGCAAATCATTATGTACTCCATTTTTTTCACAAATCTCAAGCTCCCAGAAGCTAGATTGTTGTCTTAATCCTAATTCTAGGCTTGCTACTACAGTCACAACAACTACAATATCACCTTCTGGGCTCTCAGATATACCTAAAGGTGAGCATTGTGGTCAGCATATTCTATCTCCTTATTCTCCTTCAACTATTATAGGGTCTCCTTATTCAGAACATGAAGGGGTAGTGGATACAATAGAAGACAAATTTAAAGGCTTGGTGTGTAATAATTATGTTGAAACAAGTTTGTCTGTGGGTTTGAGTTCTTCTATATTTCCACAAAAGTCATCACCAATCATTCCATGTGGGGACAAAACCATCGTCAGTTGTAAAAGACTGAAGACTAAGAATTCTTCACTGCCTGTGAAGCTCCTCAAACCATGTTCAAATGATAGAGGTTTGGATTTCCAATCAGCAGAAGACATAGATCTTGAGCTCAGGCTGGGGAAATAA 825 0.3964 MMEESDYLMWMKRKQFLKSHLHADGDGSRNNYYYSSWEEERAFAEDAGRVLGGSMWPPRSYSCTFCKREFRSAQALGGHMNVHRRDRAKLKQNLSPNNDQTLLQLDHHKNDCKSLCTPFFSQISSSQKLDCCLNPNSRLATTVTTTTISPSGLSDIPKGEHCGQHILSPYSPSTIIGSPYSEHEGVVDTIEDKFKGLVCNNYVETSLSVGLSSSIFPQKSSPIIPCGDKTIVSCKRLKTKNSSLPVKLLKPCSNDRGLDFQSAEDIDLELRLGK 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1339 274 SMART c2h2final6 61 83 IPR013087 -
Lal18g1339 274 SUPERFAMILY beta-beta-alpha zinc fingers 58 87 IPR036236 -
Lal18g1339 274 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 88 IPR013087 -
Lal18g1339 274 Gene3D Classic Zinc Finger 57 116 - -
Lal18g1339 274 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Lal18g1339 274 Pfam C2H2-type zinc finger 61 85 - -
Lal18g1339 274 PANTHER OS07G0101800 PROTEIN 2 274 - -
Lal18g1339 274 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 2 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1339 Lal-Chr18 15840555 15841379 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g1339 1 273 C2H2 Transcription Factor Family AT5G06070 35.689 1.53e-25 99.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal18g1339 zf-C2H2_6 1.5e-06 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0271 6 1772801 1774065 Lal18g1339 18 15840555 15841379 ECH
Lal1g2200 1 23972793 23975728 Lal18g1339 18 15840555 15841379 ECH
Lal9g1608 9 18391955 18392767 Lal18g1339 18 15840555 15841379 ECH
Lal18g1339 18 15840555 15841379 Lal18g1339 18 15840555 15841379 ECH
Lal18g1339 18 15840555 15841379 Lal6g0271 6 1772801 1774065 LSH
Lal3g0547 3 4083983 4084618 Lal18g1339 18 15840555 15841379 PCT