LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal18g1330	ATGGCCTCTTCTTCTCTCAATCTACCTCTCCTTCTCCCTTCTCTTGCAACTACCCTTCTATTCATCATCCTCCTTCAAATAACAACTCATCAATTTCATACAAATGCTTCTTCACAAGCACAAGCACAAGCACTTCTCATATTGCCACTAAAAGTACAAACACCACCCACTTCACGTAACCTCACTTTCCATCACAACGTAACCTTAACAATCTCAGTAACAGTTGGCACACCCCCACAGAACGTTACCATGGTCCTCGACACAGGAAGTGAACTCTCATGGCTCCATTGCAAAAAACTCTCTAACTTCAACTCCATTTTTAACCCACTCCTTTCTTCTTCATACACTCCCACCCCATGCACCACTTCCATATGCAAATCTCGAACCCAAGACTTCCCTATACCCGTTTCTTGCGACCCCAACAAACTCTGCCATGCAATTATCTCTTACGCTGATGCTTCCTCCATTGAAGGTAACCTTGCCAGTGATACATTCTTCATCGGAGGAACTGCACAACCCGGTTCCATTTTCGGTTGCATGGATACTGGGTATAGCTCCAACACCGATGAAGATTCTAAAACCACAGGGTTAATGGGTATGAACCGTGGGTCACTATCGTTCGTGAATCAAATGGGTATACCCAAATTCTCATATTGCATCTCCTCCGGTGACTCCTCCGGTGTTCTTCTATTTGGCGGCGCCACCACCACGTTCCCGTGGCTGGGGCCACTACATTATACTCCACTAGTGAAAACGACGTCGTCGTTGCCGTATTTCGATCGTGCTGCGTACACGGTTCAGCTCGAAGGGATTAAGGTTTCGGAGAAATTGCTGCAACTCCCAAAATCCGTTTTTGTACCCGATCACACCGGAGCGGGTCAAACAATGGTGGATTCGGGTACCCAATTCAGTTTCTTACTCGGGTCGGTTTACACCGCTTTGAAAAACGAGTTCGTGGCTCAAACGAAAGGGGTGCTGACGCTTCTTGACGATGCTAATTTCGTTTTCCAAGGAGCGATGGATTTGTGTTACCGAGTTCCGACGAGTTGGGCGAGTCTTCCGCCATTACCGGCGGTAACGATAGTGTTTGCGGGGGCGGAGATGAGGGTTTCGAAGGAGAGGTTGTTATATAAGGTAGGTGACGTGGCAAAAGGGAGTAATGATTCAGTGTATTGCTTCACTTTTGGGAACTCTGATCTATTGGGCATTGAAGCTTATGTGATTGGTCATCATCATCAACAGAATCTGTGGATGGAATTTGATTTGATCAACTCTAGAGTAGGGTTCACTGATACTAGGTGCGACCTTGCAAGTCAACGGCTAAGAATTGCTCCTTAG	1338	0.4664	MASSSLNLPLLLPSLATTLLFIILLQITTHQFHTNASSQAQAQALLILPLKVQTPPTSRNLTFHHNVTLTISVTVGTPPQNVTMVLDTGSELSWLHCKKLSNFNSIFNPLLSSSYTPTPCTTSICKSRTQDFPIPVSCDPNKLCHAIISYADASSIEGNLASDTFFIGGTAQPGSIFGCMDTGYSSNTDEDSKTTGLMGMNRGSLSFVNQMGIPKFSYCISSGDSSGVLLFGGATTTFPWLGPLHYTPLVKTTSSLPYFDRAAYTVQLEGIKVSEKLLQLPKSVFVPDHTGAGQTMVDSGTQFSFLLGSVYTALKNEFVAQTKGVLTLLDDANFVFQGAMDLCYRVPTSWASLPPLPAVTIVFAGAEMRVSKERLLYKVGDVAKGSNDSVYCFTFGNSDLLGIEAYVIGHHHQQNLWMEFDLINSRVGFTDTRCDLASQRLRIAP	445

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal18g1330	445	Gene3D	Acid Proteases	242	439	IPR021109	-
	Lal18g1330	445	PANTHER	ASPARTYL PROTEASE-RELATED	21	443	IPR001461	GO:0004190\|GO:0006508
	Lal18g1330	445	ProSitePatterns	Eukaryotic and viral aspartyl proteases active site.	84	95	IPR001969	GO:0004190\|GO:0006508
	Lal18g1330	445	Pfam	Xylanase inhibitor N-terminal	71	233	IPR032861	-
	Lal18g1330	445	ProSiteProfiles	Peptidase family A1 domain profile.	69	430	IPR033121	-
	Lal18g1330	445	PANTHER	EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN	21	443	-	-
	Lal18g1330	445	Gene3D	Acid Proteases	43	232	IPR021109	-
	Lal18g1330	445	Pfam	Xylanase inhibitor C-terminal	263	430	IPR032799	-
	Lal18g1330	445	PRINTS	Pepsin (A1) aspartic protease family signature	75	95	IPR001461	GO:0004190\|GO:0006508
	Lal18g1330	445	PRINTS	Pepsin (A1) aspartic protease family signature	227	240	IPR001461	GO:0004190\|GO:0006508
	Lal18g1330	445	PRINTS	Pepsin (A1) aspartic protease family signature	295	306	IPR001461	GO:0004190\|GO:0006508
	Lal18g1330	445	CDD	pepsin_A_like_plant	68	434	IPR034161	-
	Lal18g1330	445	SUPERFAMILY	Acid proteases	69	435	IPR021109	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal18g1330	Lal-Chr18	15777268	15778605	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal18g1330	70	435	Miscellaneous Gene Families	AT1G44130	23.590	1.32e-11	64.3

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lal6g0275	6	1798817	1801603	Lal18g1330	18	15777268	15778605	ECH
	Lal9g1598	9	18344011	18346264	Lal18g1330	18	15777268	15778605	ECH
	Lal18g1330	18	15777268	15778605	Lal18g1330	18	15777268	15778605	ECH