Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1325 ATGTTTCATTTTCTCTGTTTCTCTATCTATAAATACAAACACTCCTTCCTCTGTTTCATATCACATTATCAAAACAACATAGACAACATCATAAGCACCATTGACATAACAATGGATTTGGTCAATATCATCACCATTGTTTCCCTCTTATCTCTCCTAACACTAACCCAAGCCAGAATCTCCAATGTCTACTCACCCGGCGAGTGGCGTTCCGCTTCTGCCACCTTCTACGGTGGCAGCGACGCTTCTGGAACAATGGGAGGGGCATGTGGGTATGGGAACTTGTATAGCCAAGGTTATGGAGTTAACACTGCAGCGTTGAGCACTGTTTTGTTCAACAACGGTTTTAGCTGTGGCGCGTGTTTTGAGATTAAGTGTGTTAATGATCCTAAATGGTGCCATGCTGGAAACCCTTCAATTTTTGTGACAGCCACTAATTTCTGTCCTCCAAACTATGCTCTTCCAAATGACAATGGTGGTTGGTGTAACCCTCCTAGGTCTCACTTTGACCTTTCCATGCCTATGTTTCTAAAGATTGCTGAGTACCGTGCCGGCATTGTCCCCGTCAGTTATCGCCGGGTACCATGCCGAAAGAGGGGAGGGATGAGATTCACAATGAATGGTTTCAATTACTTCAACTTGGTATTAATCACGAACGTAGGAGGTGCAGGGGATATCATAAGGGTAAGTATAAAAGGTTCTAAGACTGGGTGGATGAGCATGTCTCACAATTGGGGTCAAAATTGGCAATCAGACACTGTTCTCGTGGGTCAGTCACTTTCCTTCCAAGTCACAGCCAGTGATGGAAGAACCTCCACCTCTTTGAACATTGTACCCTCTAATTGGCAATTTCACCAAACTTTCACTGGCAATAATTTTTAA 882 0.4376 MFHFLCFSIYKYKHSFLCFISHYQNNIDNIISTIDITMDLVNIITIVSLLSLLTLTQARISNVYSPGEWRSASATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTVLFNNGFSCGACFEIKCVNDPKWCHAGNPSIFVTATNFCPPNYALPNDNGGWCNPPRSHFDLSMPMFLKIAEYRAGIVPVSYRRVPCRKRGGMRFTMNGFNYFNLVLITNVGGAGDIIRVSIKGSKTGWMSMSHNWGQNWQSDTVLVGQSLSFQVTASDGRTSTSLNIVPSNWQFHQTFTGNNF 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1325 293 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 211 290 IPR007117 -
Lal18g1325 293 PRINTS Expansin/Lol pI family signature 68 83 IPR007118 GO:0005576
Lal18g1325 293 PRINTS Expansin/Lol pI family signature 86 104 IPR007118 GO:0005576
Lal18g1325 293 PRINTS Expansin/Lol pI family signature 108 126 IPR007118 GO:0005576
Lal18g1325 293 PRINTS Expansin/Lol pI family signature 184 200 IPR007118 GO:0005576
Lal18g1325 293 PRINTS Expansin/Lol pI family signature 238 252 IPR007118 GO:0005576
Lal18g1325 293 PRINTS Expansin/Lol pI family signature 276 290 IPR007118 GO:0005576
Lal18g1325 293 Gene3D - 54 197 IPR036908 -
Lal18g1325 293 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 87 201 IPR007112 -
Lal18g1325 293 SUPERFAMILY PHL pollen allergen 198 290 IPR036749 -
Lal18g1325 293 SMART dpbb_1 104 191 IPR007112 -
Lal18g1325 293 SUPERFAMILY Barwin-like endoglucanases 68 219 IPR036908 -
Lal18g1325 293 PANTHER EXPANSIN-A6 41 293 - -
Lal18g1325 293 Pfam Lytic transglycolase 104 191 IPR009009 -
Lal18g1325 293 PANTHER EXPANSIN-A15 41 293 IPR002963 GO:0009664
Lal18g1325 293 Pfam Expansin C-terminal domain 202 279 IPR007117 -
Lal18g1325 293 Gene3D - 202 293 IPR036749 -
Lal18g1325 293 PRINTS Expansin signature 99 113 IPR002963 GO:0009664
Lal18g1325 293 PRINTS Expansin signature 126 137 IPR002963 GO:0009664
Lal18g1325 293 PRINTS Expansin signature 140 150 IPR002963 GO:0009664
Lal18g1325 293 PRINTS Expansin signature 159 176 IPR002963 GO:0009664
Lal18g1325 293 PRINTS Expansin signature 176 189 IPR002963 GO:0009664
Lal18g1325 293 PRINTS Expansin signature 200 212 IPR002963 GO:0009664
Lal18g1325 293 PRINTS Expansin signature 212 233 IPR002963 GO:0009664
Lal18g1325 293 PRINTS Expansin signature 247 268 IPR002963 GO:0009664
Lal18g1325 293 PRINTS Expansin signature 276 292 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1325 Lal-Chr18 15713540 15715012 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g1325 41 293 Expansin Gene Family AT2G39700 75.494 1.92e-149 417
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g1325 - - jre:108986296 459.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0282 6 1853604 1855918 Lal18g1325 18 15713540 15715012 ECH
Lal1g2180 1 23798884 23802473 Lal18g1325 18 15713540 15715012 ECH
Lal9g1593 9 18300590 18304522 Lal18g1325 18 15713540 15715012 ECH
Lal2g1842 2 20747588 20750373 Lal18g1325 18 15713540 15715012 ECH
Lal9g0224 9 1379058 1382124 Lal18g1325 18 15713540 15715012 ECH
Lal1g0322 1 1954767 1956562 Lal18g1325 18 15713540 15715012 ECH
Lal25g0141 25 886327 890321 Lal18g1325 18 15713540 15715012 ECH
Lal18g1325 18 15713540 15715012 Lal18g1325 18 15713540 15715012 ECH
Lal18g1325 18 15713540 15715012 Lal6g0282 6 1853604 1855918 LSH
Lal18g1325 18 15713540 15715012 Lal18g1325 18 15713540 15715012 PCT
Lal18g1325 18 15713540 15715012 Lal6g0282 6 1853604 1855918 PCT
Lal6g0282 6 1853604 1855918 Lal18g1325 18 15713540 15715012 PCT