Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1322 ATGCGTAGGAACAGTCCAGGATCCAAAAGTCCTCCAAGGAGAGGATACGGCGGTAGAGGAAGAAAACCGTCGTCGTCGCCGTCGCCGTCGCCACCTCCTACTAGGAGGGGACACGGCGGCGATGGGGGAAGAGACAGGCGCAGGGAAAGCAACAATGTAAGCCTTCTGGTGAGGAATATTCCTCTTGATTGTCGATCCGACGAACTTCGAATCCCGTTCGAGCGATTCGGTAGGGTTTGCGATGTGTACATTCCGAAGGACTATTACTCAGGGGGGTGTTGGTTTAAAATTGAAGTTATAAACAAGTCCAAGCCCCAAGTTTTGAAGAGAACATATTCGTTCCAGTTCAAGTGTCATCCACAGCTGTGTTCATGTCACAGAGAAAGCCATAATAAGTTGTCTAAAGAAAGCTATGGTAAATTATGTGATTTGAGCTGGGTATGCAAATTCTGCCTAGTCAGCATAGGCTACAATATGTGTCTGCCATTTTTTTCTAGCAGTGTTAGAATCAAGCTCCACTTTTTTCCATACAGACAACCCCGAGGATTTGCATTTGTGCAGTTTTTAGATCCTCGTGATGCCTCTGAGGCGCAGTACTATATGAACAGACAGATTTTTAATGGAATGGAAATATCCGTGGTTGAGGCTGCAGAGACAAGAAAGAGACCAGAGGAGATGCGCCACAGGACTAGTAGGTTCAGAGGACCAGAGAAAAATGGGGGACGAAGGTCTTCACGTTATGGGCGTTCTCGATCTCGCTCAATTTCCAGATCTCGCTCACGCTCACTGCCTTATCAATCAAGGTCCTATTCTCCTTCCCCAAGACGGAAGACTGACTATTCTGTTTCCCCTAGAAGGCCAGCAGAGCATTCTAGATCACGAAGAAATCCTCCAACGGAGCGAGATGGTGATCAAAAGTGCAGGTCACTTTCTCCAGCTAATGGAAAGCTACATACATGTCCGAGACTGATCGAGGACAGCGGAATTCATCCCGCCGTAGAGCATCAAGATCACCCCTGGGATCTAGATCAAGGTCTCCTCCAGATTTGTCACCCAGACATGGAAGATGAGGTTGTTAGCAACATGCTGCTGGGCTTTTTGTACAATTCCTTCAATTATTATTAG 1125 0.4711 MRRNSPGSKSPPRRGYGGRGRKPSSSPSPSPPPTRRGHGGDGGRDRRRESNNVSLLVRNIPLDCRSDELRIPFERFGRVCDVYIPKDYYSGGCWFKIEVINKSKPQVLKRTYSFQFKCHPQLCSCHRESHNKLSKESYGKLCDLSWVCKFCLVSIGYNMCLPFFSSSVRIKLHFFPYRQPRGFAFVQFLDPRDASEAQYYMNRQIFNGMEISVVEAAETRKRPEEMRHRTSRFRGPEKNGGRRSSRYGRSRSRSISRSRSRSLPYQSRSYSPSPRRKTDYSVSPRRPAEHSRSRRNPPTERDGDQKCRSLSPANGKLHTCPRLIEDSGIHPAVEHQDHPWDLDQGLLQICHPDMEDEVVSNMLLGFLYNSFNYY 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1322 374 MobiDBLite consensus disorder prediction 257 278 - -
Lal18g1322 374 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 176 211 IPR000504 GO:0003723
Lal18g1322 374 PANTHER SERINE/ARGININE-RICH SC35-LIKE SPLICING FACTOR SCL30 42 83 - -
Lal18g1322 374 PANTHER SERINE/ARGININE-RICH SC35-LIKE SPLICING FACTOR SCL30 160 316 - -
Lal18g1322 374 MobiDBLite consensus disorder prediction 1 52 - -
Lal18g1322 374 SUPERFAMILY RNA-binding domain, RBD 49 241 IPR035979 GO:0003676
Lal18g1322 374 Gene3D - 3 108 IPR012677 -
Lal18g1322 374 SMART rrm1_1 54 214 IPR000504 GO:0003723
Lal18g1322 374 MobiDBLite consensus disorder prediction 279 307 - -
Lal18g1322 374 Gene3D - 136 261 IPR012677 -
Lal18g1322 374 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 53 218 IPR000504 GO:0003723
Lal18g1322 374 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 160 316 - -
Lal18g1322 374 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 42 83 - -
Lal18g1322 374 MobiDBLite consensus disorder prediction 38 52 - -
Lal18g1322 374 MobiDBLite consensus disorder prediction 219 318 - -
Lal18g1322 374 MobiDBLite consensus disorder prediction 219 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1322 Lal-Chr18 15690812 15695060 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g1322 K12900 - gmx:100792397 161.384
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1322 18 15690812 15695060 Lal22g0274 22 1748124 1751551 LSH
Lal18g1322 18 15690812 15695060 Lal6g0284 6 1860186 1864674 LSH