Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1320 ATGGGTTGCTGTTTTAGTGTAAACAGAATCAAAGCTGAGAGCCCTCCAAGAAATGGTTTGAGATCAAAGGATGGCAGCAGAGAAGTAGATGGTCTGAGCAGCAGGGTATCCGCTCCTTCTGTGCCCCAAACTCCTCGGACCGAGGGTGAGATCTTGCAGTCCTCGCGTATGAAGAGCTTCGCCTTTAGTGAACTAAGAACTGCTACAAGGAACTTTCGGCCAGATAGTGTGGTGGGCGAAGGCGGATTTGGTTGTGTATTCAAGGGATGGATTGATGAGCAGACACTTGCACCTGTTAAACCAGGGACTGGAATGGTCGTTGCTGTGAAGAGGCTTAACCAAGAAGGTTTACAGGGACACAGTGAATGGCTGACAGAAATCAATTACCTGGGCCAGCTGCACCATCCTAATCTTGTGAAACTGATTGGTTACTGCTTAGAGGATGAACACAGACTTTTGGTGTATGAGTTTCTTGCCAAGTGCAGTTTGGACAACCATTTATTTAGGAGGGCTTCTTATGTTCAACCACTTTCTTGGGAAATCCGTATGAAGGTTGCTCTTGATGCTGCTAAGGGTCTTGCCTTTCTTCACAGTGATGAAGCAAAAGTGATTTATCGAGACTTCAAAACATCTAACGTCTTGCTTGATTCAAACTATAATGCAAAACTTTCTGATTTTGGCTTGGCAAAGGATGGACCAGCCGGTGATATGAGCCATGTCTCTACAAGGGTAATGGGCACATATGGCTATGCTGCTCCTGAATATATGGCCACAGGTCACTTAACGAAAAAAAGTGATGTTTACAGCTTTGGGGTTGTTCTGCTAGAAATCATGTCAGGCAAACGTGTGCTAGATAACAATAGGCCGCCAGGGGAGCACAATCTCATTGAATGGGCCAAACCTTACCTCAACAATAAACGTAGGATCTTTCAAGTAATGGATGCTCGCATCGAAGGCCAATACACATTGCGCGATGCAATGAAAGTGGCTGACCTTGTAATTCTGTGTATTTCTGCGGAACCAAGATTTAGGCCAAAGATGGAACAAGTGGTGGCAGCATTAGAAGAACTTCAGGATTCTGATGACAAAGCTGGAGTGGGAAGTTCTAGGGTTCAAACTTCCAAAAGGAGTGATCATGGCTCAAGCAGCAGCGGCTCAAGCAGCAGTGGCTCAAGCAGTAGTGGTCCTAAACATAGAAGTTGA 1203 0.4555 MGCCFSVNRIKAESPPRNGLRSKDGSREVDGLSSRVSAPSVPQTPRTEGEILQSSRMKSFAFSELRTATRNFRPDSVVGEGGFGCVFKGWIDEQTLAPVKPGTGMVVAVKRLNQEGLQGHSEWLTEINYLGQLHHPNLVKLIGYCLEDEHRLLVYEFLAKCSLDNHLFRRASYVQPLSWEIRMKVALDAAKGLAFLHSDEAKVIYRDFKTSNVLLDSNYNAKLSDFGLAKDGPAGDMSHVSTRVMGTYGYAAPEYMATGHLTKKSDVYSFGVVLLEIMSGKRVLDNNRPPGEHNLIEWAKPYLNNKRRIFQVMDARIEGQYTLRDAMKVADLVILCISAEPRFRPKMEQVVAALEELQDSDDKAGVGSSRVQTSKRSDHGSSSSGSSSSGSSSSGPKHRS 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1320 400 Gene3D Phosphorylase Kinase; domain 1 47 157 - -
Lal18g1320 400 MobiDBLite consensus disorder prediction 16 30 - -
Lal18g1320 400 PANTHER KINASE 1B 22 386 - -
Lal18g1320 400 MobiDBLite consensus disorder prediction 358 400 - -
Lal18g1320 400 Gene3D Transferase(Phosphotransferase) domain 1 159 378 - -
Lal18g1320 400 MobiDBLite consensus disorder prediction 365 400 - -
Lal18g1320 400 MobiDBLite consensus disorder prediction 13 50 - -
Lal18g1320 400 PANTHER OS01G0588500 PROTEIN-RELATED 22 386 - -
Lal18g1320 400 MobiDBLite consensus disorder prediction 36 50 - -
Lal18g1320 400 ProSiteProfiles Protein kinase domain profile. 72 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal18g1320 400 SUPERFAMILY Protein kinase-like (PK-like) 50 355 IPR011009 -
Lal18g1320 400 Pfam Protein tyrosine and serine/threonine kinase 76 354 IPR001245 GO:0004672|GO:0006468
Lal18g1320 400 ProSitePatterns Protein kinases ATP-binding region signature. 78 110 IPR017441 GO:0005524
Lal18g1320 400 ProSitePatterns Serine/Threonine protein kinases active-site signature. 203 215 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1320 Lal-Chr18 15680741 15687461 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g1320 1 354 Glycoside Hydrolase AT3G07070 45.205 2.34e-105 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lal18g1320 PK_Tyr_Ser-Thr 7.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g1320 - - gmx:100775335 667.151
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1320 18 15680741 15687461 Lal18g1320 18 15680741 15687461 ECH
Lal5g1180 5 14573322 14576986 Lal18g1320 18 15680741 15687461 LSH
Lal18g1320 18 15680741 15687461 Lal22g0275 22 1752129 1755506 LSH
Lal5g1180 5 14573322 14576986 Lal18g1320 18 15680741 15687461 PCT
Lal18g1320 18 15680741 15687461 Lal18g1320 18 15680741 15687461 PCT
Lal18g1320 18 15680741 15687461 Lal22g0275 22 1752129 1755506 PCT
Lal18g1320 18 15680741 15687461 Lal5g1180 5 14573322 14576986 PCT
Lal22g0275 22 1752129 1755506 Lal18g1320 18 15680741 15687461 PCT