Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1316 ATGGCCCCTAAGTCAGAAATAGAAGAAGAAATTATAAGTATGGAAGAAGGTGTTAACCCCACCATTGGCCTTCAACATTGTTGTTCATCAAACAATGTTGTAACAATGGCACAAAAGGTGATTGCAGAAGTTATTGGAACATACTTTGTGATATTTGCAGGGTGTGGTTCTGTAACAGTGAATAAGATATATGGCTCTGTCACATTTCCAGGCATTTTGTATCACATGGGGTCTCATTGTAATGGTCATGATTTTCTCTGTTGCTCACTTCAATCCTGCAGTTACCATCACTTTCGCCGCCTCCGTTTTAAAGAGTTAATTTCATTGTTCATGAGCCATTACTTGTTCAGTGTTTGGTGTATTATGCACAGAACAAAAGACTTAACAAGAGTACCATTGTATATTATAGCTCAGTTGCTAGGATCGGTACTCGCTAGTAGCACATTGGCCCTAATGTTCGATGTCTCACCTACAGCTTATTTCGGAACGGTTCCAGTTGGATCAAGTGGCCAGTCATTAGTTGCTGAAATCATCATCACCTTTCTATTGATGTTTGTCATCTCTGCCGTTTCCACAGATGACAGAGCGCTAGGTGAGTTCACAGGAATTGCAGTTGGAATGACCATAATGTTGAATGTTTTTGTTGCTGGGTCTATATCAGGAGCATCAATGAACCCAGCAAGAAGTATTGGTCCTGCACTTATCAAACATGTTTACAAAGGATTATGGATATACATTGTTGGTCCAATTATTGGAGCCATAGCAGGAGCCTTTGTCTATAACTTTCTAAGATCCACAGACAAGCCACTTTCATAG 816 0.4007 MAPKSEIEEEIISMEEGVNPTIGLQHCCSSNNVVTMAQKVIAEVIGTYFVIFAGCGSVTVNKIYGSVTFPGILYHMGSHCNGHDFLCCSLQSCSYHHFRRLRFKELISLFMSHYLFSVWCIMHRTKDLTRVPLYIIAQLLGSVLASSTLALMFDVSPTAYFGTVPVGSSGQSLVAEIIITFLLMFVISAVSTDDRALGEFTGIAVGMTIMLNVFVAGSISGASMNPARSIGPALIKHVYKGLWIYIVGPIIGAIAGAFVYNFLRSTDKPLS 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1316 271 PANTHER AQUAPORIN NIP2-1 25 74 IPR034294 -
Lal18g1316 271 PANTHER AQUAPORIN NIP2-1 123 270 IPR034294 -
Lal18g1316 271 SUPERFAMILY Aquaporin-like 35 267 IPR023271 -
Lal18g1316 271 PANTHER AQUAPORIN NIP4-1-RELATED 123 270 - -
Lal18g1316 271 PANTHER AQUAPORIN NIP4-1-RELATED 25 74 - -
Lal18g1316 271 Pfam Major intrinsic protein 121 260 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal18g1316 271 Gene3D Glycerol uptake facilitator protein. 26 269 IPR023271 -
Lal18g1316 271 PRINTS Major intrinsic protein family signature 38 57 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal18g1316 271 PRINTS Major intrinsic protein family signature 130 149 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal18g1316 271 PRINTS Major intrinsic protein family signature 175 193 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal18g1316 271 PRINTS Major intrinsic protein family signature 206 228 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal18g1316 271 PRINTS Major intrinsic protein family signature 243 263 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1316 Lal-Chr18 15659452 15660857 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g1316 5 270 Major Intrinsic Protein MIP AT5G37820 54.244 1.34e-86 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g1316 K09874 - gmx:100791338 311.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1316 18 15659452 15660857 Lal18g1316 18 15659452 15660857 ECH