Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1312 ATGTTCTTTTGCCACTCTGGAATCTATTCCGTTCGTTTTTTCCAGTCTATTCGCAGAACTCGGTCTTTTCCATGGCAGCGTGATTTGTTTGAGGATAGCCTAAGAGCTGCAGGGATACAAGGAGTAGAAGTTGGCACAAAATTGTATGTCTCAAACTTGGACCATGGAGTGACTAATGAAGACATAAGGGAACTTTTCTCTGAGATTGGAGATTTGAAGCGCTATGCAATTCATTATGATAAAAATGGACATCCAAGTGGTTCATCTGAAGTTGTTTATACTAGAAGAAGTGATGCATTTGCTGCTCTTAAAAGATATAATGATGTACTTTTGGATGGAAAGCCCATGAAGATTGAGATTGTTGGTGCCAATGCAGAATTACCTATAACTGCTTGTATAAATGTCACTGGAGTAAATGGAAAGAGGAAGAGGACAGTTGTAATGAAGCCTGGAGGAGGTCGAAGTGGAGGTCGTGCTGCTCTTAGTCATGGTGCTGGAAATATAAACTTGCGCCGTGGTGGTGGTGGTGCAAGGCATGGGATTGTACGTGGTCGAGGCAATGGACGTGGCAAGGGTAGAGGCCGAGGCCAAGGTCGCGGGAAAAAAGATGGTATTGAGAAGTCAGCTGAGGAACTTGATAAGGAACTGGAGACCTATCATGCTGAGGCTATGCTCATCTCATGA 684 0.4386 MFFCHSGIYSVRFFQSIRRTRSFPWQRDLFEDSLRAAGIQGVEVGTKLYVSNLDHGVTNEDIRELFSEIGDLKRYAIHYDKNGHPSGSSEVVYTRRSDAFAALKRYNDVLLDGKPMKIEIVGANAELPITACINVTGVNGKRKRTVVMKPGGGRSGGRAALSHGAGNINLRRGGGGARHGIVRGRGNGRGKGRGRGQGRGKKDGIEKSAEELDKELETYHAEAMLIS 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1312 227 Gene3D - 41 122 IPR012677 -
Lal18g1312 227 Coils Coil 202 222 - -
Lal18g1312 227 SMART FoP_duplication_2 153 227 IPR025715 -
Lal18g1312 227 Pfam C-terminal duplication domain of Friend of PRMT1 171 221 IPR025715 -
Lal18g1312 227 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 48 116 IPR000504 GO:0003723
Lal18g1312 227 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 46 123 IPR000504 GO:0003723
Lal18g1312 227 SUPERFAMILY RNA-binding domain, RBD 40 120 IPR035979 GO:0003676
Lal18g1312 227 MobiDBLite consensus disorder prediction 172 208 - -
Lal18g1312 227 PANTHER THO COMPLEX SUBUNIT 4C 12 225 - -
Lal18g1312 227 CDD RRM_THOC4 46 120 - -
Lal18g1312 227 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 12 225 - -
Lal18g1312 227 SMART rrm1_1 47 119 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1312 Lal-Chr18 15630174 15635320 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g1312 45 120 Eukaryotic Initiation Factors Gene Family AT2G23350 36.842 1.77e-09 55.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1312 18 15630174 15635320 Lal18g1312 18 15630174 15635320 ECH
Lal3g0527 3 3856119 3861344 Lal18g1312 18 15630174 15635320 LSH
Lal5g1196 5 14731460 14736978 Lal18g1312 18 15630174 15635320 LSH