LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal18g1301	ATGACACTAACACATTGTAGGAAAAGTGCGAAACAGCCACGACAAGTGAAGCCACGTGTAAAGTCGCTCTTTGGATATGAGCCACATGATTCCATCGAGTTCTCGACATTTCGTGATCAAAATGGAGTTACTAGGTTACATGGTGGTCTTTCTGAAGGAAATGGAGTGTTTTTGAGTCCTGGCATGGATTCTGTTACACATATTCAACCACAGGATCAGTTTTCGTCCGGAAATAGCAATGCCCTTAAGGTGAGGAAAGCATATACTATCTCCAAGCAGCGAGAGAAATGGATGGATGAAGAACATAAGAAGTTTCTTGAAGCTTTAAAGCTGTATGGCCGAGCCTGGCCACGAATCGAAGAACATGTTGGAACAAAGACAGCTGTTCAGATTCGAAGTCATGCTCAGAAGTTTTTTTCTAAGGTTACTCGAGATTCGAGTGGGAGCAATACAAGCTTAGTTGAGTCGATTGAAATTCCACCTCCACGACCAAAACGAAAGCCAACACATCCTTACCCGCGTAAATTAGTTGAGACTCGCAAGAAGAGAGTTTCAAACGCAGAACAGCCACAGAGGCCCTGCTCCCCTAAGTCATCACATTTCGATCAAGAAAGCATATCTCCCAAATCAGTATTATCTGGAGATGTTTCAGAAACACTTGGTTCATCGGATTCAGATACACCAACTCAAAGTTTATCCCCTTTGTCATCCATTAATGGTGTCCATACTAGTGGATTTTCTCTCATTGAACCCAAAACATCGTTTGAGGAACACGGATCTCCACCACCAACTGGACTAAACACTGGTTTAGCTCATGATGAGCAACCTCTTGAGAAACTTGAGCTTTTGCACAATGAAAGTGTTTCTACCAAAGACGTTGCCACGGAAGAATCATCCGGTTACACTCTCAAACTTTTCGGGACAACTTTATTTGTAACAGATACCAGCAGACCATCTTCTCCATCAGTGGAGGCATGCAAACCAATACCTGCCATGTATTACACCCAACTTCAGAGTGAAAATTCTGATATTGCTGAAGGTCATTCATCTATTGTTCCTTGGTGGAGTATTTCCCTCAATAGACCTTTCATGCCACTGCACAAGGAGCATGAGGGGAAACATATAGATTCTAATCTCATGGACTTTGAAGAGAAAGAAGTTCAGAAGGAAGGATCTTCAACTGGTTCGAATTCGAATAATAGTTCAGTCCATGATGGAGAGAACAATGAAAGTTCAGGTGACCAAGCCAAAAGTCATGTGCATTGCTTTAACAAGGTGGATGAACTGTTGAACCTTCTTGGCCACACCACTGCACAGAGTGAAATATCAGCCATATCTAAGCTAAGAGTGAGACCTAATACCAGCAGGAAAGGGTTTGTTCCCTATAAAAGGTGCATGGCAGAGAGAGAAAACCATAACTTATTTGTAACAGGTGAAGAAATGGACATGCAACAAATCAGGCTATCCTTGTAA	1473	0.4229	MTLTHCRKSAKQPRQVKPRVKSLFGYEPHDSIEFSTFRDQNGVTRLHGGLSEGNGVFLSPGMDSVTHIQPQDQFSSGNSNALKVRKAYTISKQREKWMDEEHKKFLEALKLYGRAWPRIEEHVGTKTAVQIRSHAQKFFSKVTRDSSGSNTSLVESIEIPPPRPKRKPTHPYPRKLVETRKKRVSNAEQPQRPCSPKSSHFDQESISPKSVLSGDVSETLGSSDSDTPTQSLSPLSSINGVHTSGFSLIEPKTSFEEHGSPPPTGLNTGLAHDEQPLEKLELLHNESVSTKDVATEESSGYTLKLFGTTLFVTDTSRPSSPSVEACKPIPAMYYTQLQSENSDIAEGHSSIVPWWSISLNRPFMPLHKEHEGKHIDSNLMDFEEKEVQKEGSSTGSNSNNSSVHDGENNESSGDQAKSHVHCFNKVDELLNLLGHTTAQSEISAISKLRVRPNTSRKGFVPYKRCMAERENHNLFVTGEEMDMQQIRLSL	490

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal18g1301	490	MobiDBLite	consensus disorder prediction	188	238	-	-
	Lal18g1301	490	SUPERFAMILY	Homeodomain-like	88	143	IPR009057	-
	Lal18g1301	490	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	89	143	IPR017930	-
	Lal18g1301	490	MobiDBLite	consensus disorder prediction	384	416	-	-
	Lal18g1301	490	MobiDBLite	consensus disorder prediction	140	156	-	-
	Lal18g1301	490	Pfam	Myb-like DNA-binding domain	94	137	IPR001005	-
	Lal18g1301	490	PANTHER	SWI/SNF COMPLEX-RELATED	71	477	-	-
	Lal18g1301	490	TIGRFAM	myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class	92	141	IPR006447	GO:0003677
	Lal18g1301	490	CDD	SANT	96	139	IPR001005	-
	Lal18g1301	490	Gene3D	-	96	143	-	-
	Lal18g1301	490	SMART	sant	93	141	IPR001005	-
	Lal18g1301	490	MobiDBLite	consensus disorder prediction	140	238	-	-
	Lal18g1301	490	MobiDBLite	consensus disorder prediction	391	409	-	-
	Lal18g1301	490	ProSiteProfiles	SANT domain profile.	92	143	IPR017884	-
	Lal18g1301	490	MobiDBLite	consensus disorder prediction	160	187	-	-
	Lal18g1301	490	ProSiteProfiles	Myb-like domain profile.	89	139	IPR001005	-
	Lal18g1301	490	MobiDBLite	consensus disorder prediction	252	271	-	-
	Lal18g1301	490	PANTHER	PROTEIN REVEILLE 7-RELATED	71	477	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal18g1301	Lal-Chr18	15543212	15546826	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB-related	Lal18g1301		Myb_DNA-binding	2.8e-11	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal18g1301	-		-	lang:109339594	815.839