Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1300 ATGGAGGAAGAACATCAAAACCTTGAAAGCTTCTTAACCTGGGCAGCACAACTTGGAATATCAGACTCAACAACCACCAACCACTCTCACCATTCTCTCTCTTCTTTCGGTTTCTCTCTCTCTGTTTCTCATTTTCCTCACTCTGGCGGAAGAGGTTTGGGTGCTGTGAGAGACCTTAAGAGGGGAGAATTGATTCTAAGGGTTCCAAAATCAGCTTTAATGACAAGAGATAGTGTTATGGAAGATAAAAAACTCTGCTTTTCTCTCAATAATAAACACTCTTCTCTCTCCCCGACCCAGATATTAACTGTATGCTTATTGTATGAAATGGGTAAAGGAAAGACTTCAAGGTGGCATCCTTACCTCGTGCATTTGCCGCAGAGTTATGACATACTAGCAACGTTTGGTGAATTTGAGAAACATGCTTTGCAAGTTCAGTTTCTCTTTCAAATTTTACTTTCCATCGTAGATGAAGCTGTGTGGGTCACAGAAAAGGCTGTAATAAAAGCCAAATCAGAGTGGAAAGAAGCTCAGGCTTTGATGGAAGAACTGAAGCTTAAGCCCCGACTTTTAACATTTAAGGCTTGGGTTTGGGCTGCTGCAACGATATCTTCTCGGACATTGCATGTACCATGGGATGAAGCTGGGTGTTTATGCCCTGTTGGTGACTTGTTTAACTATGATGCACCTGGGAAGGAGCCATGTAGCGTTGGGGATGGTGAGGATTTACTATCTAACTCTTCCGTCCATGTTACTGACATGTCAAATGGAGGCAATACTATGATGGTAGATTCAGAACAGTTTGATTCTCATTCTCAGAGATTAACTGATGGCGGGTTTGAGGAAGATGCTAATGCATATTGCTTTTATGCTAGGGCACATTACAAGAAAGGAGATCAGGTTCTATTATGTTACGGTACTTACACCAATTTGGAGCTTCTTGAACACTACGGGTTTCTACTACATGAAAATCCAAATGACAAAGTTTTCATCCCTTTAGAACCTGCTGTATATTCTTCCAGTTCTTGGTCTAAGGAATCGCTCTATATCCATCATAATGGTAGGCCTTCATTCGCACTACTAGCTGCATTGCGGTTGTGGGCAACCCCACAAAATAAAAGGAGGTCTGTTGGACATCTTGCATATGCTGGTTCTCAACTCTCTCCTGAAAATGAAATTTCCATCATGAAACGGCTTTCAGAAACTTGCTACGCTGTCTTACAGAACATGCTGACATGTATTGATGATGACAACTTGCTTCTGAATGCAATAGATTGTCAAGATTTTCATACTCTCATGGACTTCACAAAATTAATGTCTTCCAAGGATGAGATTTATACCTTCTTAGAAGCTCATGATATGAAGGATGCTCACAGTTTTACTGATAAACTTTTATCTAAAAATACAACAAGATGCATGGATAGGTGGAAATTGGCTGTGCAATGGAGGGTCAGGTATAAGAAAGTCCTTGTTAACTGCATTTCTTATTGCAATGAAATACTAGATTCTTTCATGAAGTAA 1521 0.403 MEEEHQNLESFLTWAAQLGISDSTTTNHSHHSLSSFGFSLSVSHFPHSGGRGLGAVRDLKRGELILRVPKSALMTRDSVMEDKKLCFSLNNKHSSLSPTQILTVCLLYEMGKGKTSRWHPYLVHLPQSYDILATFGEFEKHALQVQFLFQILLSIVDEAVWVTEKAVIKAKSEWKEAQALMEELKLKPRLLTFKAWVWAAATISSRTLHVPWDEAGCLCPVGDLFNYDAPGKEPCSVGDGEDLLSNSSVHVTDMSNGGNTMMVDSEQFDSHSQRLTDGGFEEDANAYCFYARAHYKKGDQVLLCYGTYTNLELLEHYGFLLHENPNDKVFIPLEPAVYSSSSWSKESLYIHHNGRPSFALLAALRLWATPQNKRRSVGHLAYAGSQLSPENEISIMKRLSETCYAVLQNMLTCIDDDNLLLNAIDCQDFHTLMDFTKLMSSKDEIYTFLEAHDMKDAHSFTDKLLSKNTTRCMDRWKLAVQWRVRYKKVLVNCISYCNEILDSFMK 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1300 506 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 4 491 - -
Lal18g1300 506 Gene3D set domain protein methyltransferase, domain 1 4 320 - -
Lal18g1300 506 Gene3D - 337 505 IPR036464 -
Lal18g1300 506 CDD SET_LSMT 49 320 - -
Lal18g1300 506 Pfam SET domain 50 306 IPR001214 GO:0005515
Lal18g1300 506 SUPERFAMILY SET domain 7 324 IPR046341 -
Lal18g1300 506 Coils Coil 167 187 - -
Lal18g1300 506 PANTHER PROTEIN SET DOMAIN GROUP 40 4 491 - -
Lal18g1300 506 ProSiteProfiles SET domain profile. 36 306 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1300 Lal-Chr18 15539925 15543026 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lal18g1300 SET 8e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g1300 - - gmx:100787452 753.821