Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1291 ATGCTCGCTTTTGCAGCTTCAGCTTCTAGACACATTCTTCAACGTGATGCTAGACCCACCATTAGTTTCGGTGGTTCTAGTGGCTGTGGCATTCAAATTCGATATCTTTTAAGCGTTTCTGGTATAACCAGATTCTCAAATCACACTAGAATTGATAGAGGTTACAATTTTAGAATCAGCTTGAATCAGCTACAACGTAGAGCATGCCCAAGTTTGCATTTTTCCATAAAGGGGTTCCTCTCTGATTCATCATCTTCTTCTCATTTACATGGCAGAGTAACAAGACCTTATTTACAACAATCCAATTCAACGCTAGGTGGAAGAGCATTGTTCTCAACTTCAACTAAAGCTGATGATGGATCTGCATCAAAGAAAACTAGTGCTTCCACCATTGCTAAGTCACCACAAGGAGAAAATATTGCTGATATGAAGATCCTTCGTACACTTGCCAGTTATATTTGGATGAAAGACAATCTTGAGTTTCGCTTTCGGGTTATTGCTGCATTGGGTTTTCTTGTTGGTGCTAAGGTTCTGAATGTTCAGGTGCCTTTCATGTTCAAGCTTGCAGTTGATTGGTTGTCATCTGCCACGGGCAATACTGGTGATCTTGCTTCTTTTACGGCCGCAAATTCGACTGCGTTGGCTCTTTTTGCAACCCCAGTGGCAGTGTTGATTGGATATGGGATTGCACGAGCTGGAGCTTCGGCTTTCAATGAACTACGGACTGCTGTATTTTCTAAGGTAGCATTGCGAACAATTCGATTAGTATCAAGGAAGATTTTCTCACATTTGCATGACCTTGACCTTCGATATCATCTAAGTCGAGAAACTGGTGCGTTAAGTAGAACAGTTGATCGTGGTAGCCATGCGATAAATTTCATTCTCTCAGCTATGGTGTTGAATGTAGTACCCACAATATTAGAGATATCTATGGTATCAGGTATACTGGCCTACAATTTTGGAGCTCCTTTTGCATGGATTACGTCCTTATCAGTGGCAGCTTATGTTATTTTTACACTGACTGTCACACAGTGGAGGACTAAGTTCAGGAGAGACATGAATAAGGCCGATAATGATGCTAGTACAAGAGCTATTGATTCACTTATTAATTATGAGACTGTCAAATATTTCAATAATGAAGATTATGAAGCTGGAAAATATGACGAATACCTAAAGAAGTACGAGGATGCTTCTCTGAAAACACAAGAGAGTCTTGCTTTCTTGAACTTTGGTCAAAATGTTATCTTTAGTACTGCACTTTCCACAGCAATGGTGTTGTGTTCTCATGGGATCATGAGTGGCACAATGACTGTTGGTGATTTGGTGATGGTGAACGGGCTTCTCTTCCAACTATCTCTTCCACTGAACTTCCTAGGTGGTGTTTATCGTGAGACTATACAGAGTCTAGTTGACATGAAGTCCTTGTTTCGGTTACTTGAGGAAAGAGCAGATATTAAGGATAAAGATGATGCAAAGCCTCTGAGATTTAATGGGGGGAGCATCCAATTTGAGAATGTACATTTCGGTTATCTCACAGAAAGAAAGATACTAGATGGGATATCGCTTGTTATGCCGGCTGGTAAAAGTGTGGCAATTGTTGGGACTAGTGGAAGTGGAAAATCAACCATTCTTAGATTGCTATTCAGGTTTTTTGATCCTCACTCTGGAAGTATAAAGATAGATGGTCAGGATGTTCGGGAGGTAACCCTTCAGAGTTTGCGGAAGTCTATTGGTGTTGTTCCTCAAGATACTGTACTTTTCAATGATACAATATTTCATAACATTCATTACGGTCGACTTTCAGCAACAAAAGAGGAGGTCTATGAAGCTGCTCAGCATGCAGCAATTCATGAAACTATCATGAATTTTCCTGATAAATATTCAACTGTTGTGGGAGAGCGAGGGCTCAAGTTAAGTGGTGGTGAGAAGCAGCGTGTTGCCCTAGCTCGTGCGTTCTTGAAAGCACCTGCAATATTGTTGTGCGATGAAGCTACAAGTGCTCTTGACAGCACAACAGAAGCAGAGATTTTATGTGCATTTAAGTCACTCGCAAAAAATCGAACTTCCATATTCATTGCTCACAGGCTTACCACTGCAATGCAGTGTGATGAGATCATAGTTTTGGAGAATGGAAAGGTGATTGAACAAGGACCCCATGAAGTGCTCTTATCAAAGGGGGGAAGATATGCACAGCTTTGGGGACAGCAAAATAAAACAGATGATTCAATTGATACAACCATCAAACTTGGGGCATAA 2256 0.4087 MLAFAASASRHILQRDARPTISFGGSSGCGIQIRYLLSVSGITRFSNHTRIDRGYNFRISLNQLQRRACPSLHFSIKGFLSDSSSSSHLHGRVTRPYLQQSNSTLGGRALFSTSTKADDGSASKKTSASTIAKSPQGENIADMKILRTLASYIWMKDNLEFRFRVIAALGFLVGAKVLNVQVPFMFKLAVDWLSSATGNTGDLASFTAANSTALALFATPVAVLIGYGIARAGASAFNELRTAVFSKVALRTIRLVSRKIFSHLHDLDLRYHLSRETGALSRTVDRGSHAINFILSAMVLNVVPTILEISMVSGILAYNFGAPFAWITSLSVAAYVIFTLTVTQWRTKFRRDMNKADNDASTRAIDSLINYETVKYFNNEDYEAGKYDEYLKKYEDASLKTQESLAFLNFGQNVIFSTALSTAMVLCSHGIMSGTMTVGDLVMVNGLLFQLSLPLNFLGGVYRETIQSLVDMKSLFRLLEERADIKDKDDAKPLRFNGGSIQFENVHFGYLTERKILDGISLVMPAGKSVAIVGTSGSGKSTILRLLFRFFDPHSGSIKIDGQDVREVTLQSLRKSIGVVPQDTVLFNDTIFHNIHYGRLSATKEEVYEAAQHAAIHETIMNFPDKYSTVVGERGLKLSGGEKQRVALARAFLKAPAILLCDEATSALDSTTEAEILCAFKSLAKNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGPHEVLLSKGGRYAQLWGQQNKTDDSIDTTIKLGA 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1291 751 CDD ABC_6TM_ATM1_ABCB7 168 475 - -
Lal18g1291 751 Pfam ABC transporter transmembrane region 166 454 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lal18g1291 751 Gene3D ABC transporter type 1, transmembrane domain 152 491 IPR036640 GO:0005524|GO:0016021
Lal18g1291 751 ProSitePatterns ABC transporters family signature. 638 652 IPR017871 GO:0005524
Lal18g1291 751 Gene3D - 492 748 IPR027417 -
Lal18g1291 751 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 501 735 IPR003439 GO:0005524
Lal18g1291 751 PANTHER BNAA10G12020D PROTEIN 64 741 - -
Lal18g1291 751 SUPERFAMILY ABC transporter transmembrane region 160 481 IPR036640 GO:0005524|GO:0016021
Lal18g1291 751 SMART AAA_5 526 712 IPR003593 -
Lal18g1291 751 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 64 741 IPR039421 -
Lal18g1291 751 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 490 736 IPR027417 -
Lal18g1291 751 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 166 467 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lal18g1291 751 CDD ABCC_ATM1_transporter 501 736 - -
Lal18g1291 751 Pfam ABC transporter 517 666 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1291 Lal-Chr18 15482041 15496555 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g1291 337 742 Calmodulin-binding Proteins AT2G36910 35.971 3.48e-64 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g1291 K05662 - gmx:100779975 1127.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1291 18 15482041 15496555 Lal18g1291 18 15482041 15496555 ECH
Lal18g1291 18 15482041 15496555 Lal22g0312 22 1960483 1972075 LSH