Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lal18g1291 | ATGCTCGCTTTTGCAGCTTCAGCTTCTAGACACATTCTTCAACGTGATGCTAGACCCACCATTAGTTTCGGTGGTTCTAGTGGCTGTGGCATTCAAATTCGATATCTTTTAAGCGTTTCTGGTATAACCAGATTCTCAAATCACACTAGAATTGATAGAGGTTACAATTTTAGAATCAGCTTGAATCAGCTACAACGTAGAGCATGCCCAAGTTTGCATTTTTCCATAAAGGGGTTCCTCTCTGATTCATCATCTTCTTCTCATTTACATGGCAGAGTAACAAGACCTTATTTACAACAATCCAATTCAACGCTAGGTGGAAGAGCATTGTTCTCAACTTCAACTAAAGCTGATGATGGATCTGCATCAAAGAAAACTAGTGCTTCCACCATTGCTAAGTCACCACAAGGAGAAAATATTGCTGATATGAAGATCCTTCGTACACTTGCCAGTTATATTTGGATGAAAGACAATCTTGAGTTTCGCTTTCGGGTTATTGCTGCATTGGGTTTTCTTGTTGGTGCTAAGGTTCTGAATGTTCAGGTGCCTTTCATGTTCAAGCTTGCAGTTGATTGGTTGTCATCTGCCACGGGCAATACTGGTGATCTTGCTTCTTTTACGGCCGCAAATTCGACTGCGTTGGCTCTTTTTGCAACCCCAGTGGCAGTGTTGATTGGATATGGGATTGCACGAGCTGGAGCTTCGGCTTTCAATGAACTACGGACTGCTGTATTTTCTAAGGTAGCATTGCGAACAATTCGATTAGTATCAAGGAAGATTTTCTCACATTTGCATGACCTTGACCTTCGATATCATCTAAGTCGAGAAACTGGTGCGTTAAGTAGAACAGTTGATCGTGGTAGCCATGCGATAAATTTCATTCTCTCAGCTATGGTGTTGAATGTAGTACCCACAATATTAGAGATATCTATGGTATCAGGTATACTGGCCTACAATTTTGGAGCTCCTTTTGCATGGATTACGTCCTTATCAGTGGCAGCTTATGTTATTTTTACACTGACTGTCACACAGTGGAGGACTAAGTTCAGGAGAGACATGAATAAGGCCGATAATGATGCTAGTACAAGAGCTATTGATTCACTTATTAATTATGAGACTGTCAAATATTTCAATAATGAAGATTATGAAGCTGGAAAATATGACGAATACCTAAAGAAGTACGAGGATGCTTCTCTGAAAACACAAGAGAGTCTTGCTTTCTTGAACTTTGGTCAAAATGTTATCTTTAGTACTGCACTTTCCACAGCAATGGTGTTGTGTTCTCATGGGATCATGAGTGGCACAATGACTGTTGGTGATTTGGTGATGGTGAACGGGCTTCTCTTCCAACTATCTCTTCCACTGAACTTCCTAGGTGGTGTTTATCGTGAGACTATACAGAGTCTAGTTGACATGAAGTCCTTGTTTCGGTTACTTGAGGAAAGAGCAGATATTAAGGATAAAGATGATGCAAAGCCTCTGAGATTTAATGGGGGGAGCATCCAATTTGAGAATGTACATTTCGGTTATCTCACAGAAAGAAAGATACTAGATGGGATATCGCTTGTTATGCCGGCTGGTAAAAGTGTGGCAATTGTTGGGACTAGTGGAAGTGGAAAATCAACCATTCTTAGATTGCTATTCAGGTTTTTTGATCCTCACTCTGGAAGTATAAAGATAGATGGTCAGGATGTTCGGGAGGTAACCCTTCAGAGTTTGCGGAAGTCTATTGGTGTTGTTCCTCAAGATACTGTACTTTTCAATGATACAATATTTCATAACATTCATTACGGTCGACTTTCAGCAACAAAAGAGGAGGTCTATGAAGCTGCTCAGCATGCAGCAATTCATGAAACTATCATGAATTTTCCTGATAAATATTCAACTGTTGTGGGAGAGCGAGGGCTCAAGTTAAGTGGTGGTGAGAAGCAGCGTGTTGCCCTAGCTCGTGCGTTCTTGAAAGCACCTGCAATATTGTTGTGCGATGAAGCTACAAGTGCTCTTGACAGCACAACAGAAGCAGAGATTTTATGTGCATTTAAGTCACTCGCAAAAAATCGAACTTCCATATTCATTGCTCACAGGCTTACCACTGCAATGCAGTGTGATGAGATCATAGTTTTGGAGAATGGAAAGGTGATTGAACAAGGACCCCATGAAGTGCTCTTATCAAAGGGGGGAAGATATGCACAGCTTTGGGGACAGCAAAATAAAACAGATGATTCAATTGATACAACCATCAAACTTGGGGCATAA | 2256 | 0.4087 | MLAFAASASRHILQRDARPTISFGGSSGCGIQIRYLLSVSGITRFSNHTRIDRGYNFRISLNQLQRRACPSLHFSIKGFLSDSSSSSHLHGRVTRPYLQQSNSTLGGRALFSTSTKADDGSASKKTSASTIAKSPQGENIADMKILRTLASYIWMKDNLEFRFRVIAALGFLVGAKVLNVQVPFMFKLAVDWLSSATGNTGDLASFTAANSTALALFATPVAVLIGYGIARAGASAFNELRTAVFSKVALRTIRLVSRKIFSHLHDLDLRYHLSRETGALSRTVDRGSHAINFILSAMVLNVVPTILEISMVSGILAYNFGAPFAWITSLSVAAYVIFTLTVTQWRTKFRRDMNKADNDASTRAIDSLINYETVKYFNNEDYEAGKYDEYLKKYEDASLKTQESLAFLNFGQNVIFSTALSTAMVLCSHGIMSGTMTVGDLVMVNGLLFQLSLPLNFLGGVYRETIQSLVDMKSLFRLLEERADIKDKDDAKPLRFNGGSIQFENVHFGYLTERKILDGISLVMPAGKSVAIVGTSGSGKSTILRLLFRFFDPHSGSIKIDGQDVREVTLQSLRKSIGVVPQDTVLFNDTIFHNIHYGRLSATKEEVYEAAQHAAIHETIMNFPDKYSTVVGERGLKLSGGEKQRVALARAFLKAPAILLCDEATSALDSTTEAEILCAFKSLAKNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGPHEVLLSKGGRYAQLWGQQNKTDDSIDTTIKLGA | 751 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lal18g1291 | 751 | CDD | ABC_6TM_ATM1_ABCB7 | 168 | 475 | - | - | |
Lal18g1291 | 751 | Pfam | ABC transporter transmembrane region | 166 | 454 | IPR011527 | GO:0005524|GO:0016021|GO:0055085|GO:0140359 | |
Lal18g1291 | 751 | Gene3D | ABC transporter type 1, transmembrane domain | 152 | 491 | IPR036640 | GO:0005524|GO:0016021 | |
Lal18g1291 | 751 | ProSitePatterns | ABC transporters family signature. | 638 | 652 | IPR017871 | GO:0005524 | |
Lal18g1291 | 751 | Gene3D | - | 492 | 748 | IPR027417 | - | |
Lal18g1291 | 751 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 501 | 735 | IPR003439 | GO:0005524 | |
Lal18g1291 | 751 | PANTHER | BNAA10G12020D PROTEIN | 64 | 741 | - | - | |
Lal18g1291 | 751 | SUPERFAMILY | ABC transporter transmembrane region | 160 | 481 | IPR036640 | GO:0005524|GO:0016021 | |
Lal18g1291 | 751 | SMART | AAA_5 | 526 | 712 | IPR003593 | - | |
Lal18g1291 | 751 | PANTHER | ATP-BINDING CASSETTE SUB-FAMILY B | 64 | 741 | IPR039421 | - | |
Lal18g1291 | 751 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 490 | 736 | IPR027417 | - | |
Lal18g1291 | 751 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 166 | 467 | IPR011527 | GO:0005524|GO:0016021|GO:0055085|GO:0140359 | |
Lal18g1291 | 751 | CDD | ABCC_ATM1_transporter | 501 | 736 | - | - | |
Lal18g1291 | 751 | Pfam | ABC transporter | 517 | 666 | IPR003439 | GO:0005524 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lal18g1291 | Lal-Chr18 | 15482041 | 15496555 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lal18g1291 | 337 | 742 | Calmodulin-binding Proteins | AT2G36910 | 35.971 | 3.48e-64 | 231 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lal18g1291 | K05662 | - | gmx:100779975 | 1127.46 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Lal18g1291 | 18 | 15482041 | 15496555 | Lal18g1291 | 18 | 15482041 | 15496555 | ECH | |
Lal18g1291 | 18 | 15482041 | 15496555 | Lal22g0312 | 22 | 1960483 | 1972075 | LSH |