Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1282 ATGTCCGTACAGTCAACGTTGAAGCTCCAGAACCTGAAGCTCCCAACATCAAGTTCAAATTTTGAGAGCTACCCATTATGCAAAACAAGGAAGAAAACTAAGAAGGTTGTTCGGATTATAGTAACTGATCATGATGCTACTGATTCAGATTCTTCAAGCGATGAAGAACGAGAAAAGAAGCAAAAAAGAGTGAAGAGGGAAATCACACAGATCACTATGCACTTTCCCTTCTCTGATTCTCCTTCTTCTGTTTCCTCTTCTCGCTCTTGCTCCTCCTTTTCTTCTTCATCAGAACAGGGTGGTTGTAAGAAGTTCAAGAGTACTAAGAAATCACTGTCCTCCATCGCCAGCGCCGTCGTACACCACAGCAACAAGTTCCGCGGCGTCCGGCAGCGACCGTGGGGCCGGTGGGCTGCTGAGATTCGTGACCCCAACCGGAGGAAACGGGTCTGGCTTGGAACGTTTGACACGGCGGAGGAGGCCGCCACCATGTACGACAAGGCGGCGGTGGAGCTGAAAGGACCTAACGCCATCACTAACTTCCCCACACCGGCGAAGGAGGAGGAAGTGGTGACGCAGGCTACTACCGCGGAAAGCCTGAGTGTGGACGGCGGCGCGTTATATTCCGACACAGTGGCGTCGCCTACTTCTGTTTTGCCTTATGACGGCGACTCGACGCCGTTCGACGGTTTCAGTTACGGGGACGTGGATGCGTTTGGTTTCGACATCGACATGCCGTTAAGTCTGCCGGACGTTAACGTTATGCTGACGTGTCAGCAATTTGGGAAGGAAGAGGTGTTTGGGGAGTTTGACTTTGACGAGTTTATGACGTGGCCCTGA 840 0.5155 MSVQSTLKLQNLKLPTSSSNFESYPLCKTRKKTKKVVRIIVTDHDATDSDSSSDEEREKKQKRVKREITQITMHFPFSDSPSSVSSSRSCSSFSSSSEQGGCKKFKSTKKSLSSIASAVVHHSNKFRGVRQRPWGRWAAEIRDPNRRKRVWLGTFDTAEEAATMYDKAAVELKGPNAITNFPTPAKEEEVVTQATTAESLSVDGGALYSDTVASPTSVLPYDGDSTPFDGFSYGDVDAFGFDIDMPLSLPDVNVMLTCQQFGKEEVFGEFDFDEFMTWP 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1282 279 PIRSF PTI6 7 279 IPR017392 GO:0003700
Lal18g1282 279 PRINTS Ethylene responsive element binding protein signature 126 137 IPR001471 GO:0003700|GO:0006355
Lal18g1282 279 PRINTS Ethylene responsive element binding protein signature 148 164 IPR001471 GO:0003700|GO:0006355
Lal18g1282 279 MobiDBLite consensus disorder prediction 45 64 - -
Lal18g1282 279 Gene3D AP2/ERF domain 124 183 IPR036955 GO:0003700|GO:0006355
Lal18g1282 279 SUPERFAMILY DNA-binding domain 125 183 IPR016177 GO:0003677
Lal18g1282 279 PANTHER PATHOGENESIS-RELATED GENES TRANSCRIPTIONAL ACTIVATOR PTI6-LIKE 30 276 - -
Lal18g1282 279 ProSiteProfiles AP2/ERF domain profile. 125 182 IPR001471 GO:0003700|GO:0006355
Lal18g1282 279 SMART rav1_2 125 188 IPR001471 GO:0003700|GO:0006355
Lal18g1282 279 CDD AP2 125 182 IPR001471 GO:0003700|GO:0006355
Lal18g1282 279 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 30 276 - -
Lal18g1282 279 MobiDBLite consensus disorder prediction 75 102 - -
Lal18g1282 279 Pfam AP2 domain 125 174 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1282 Lal-Chr18 15427514 15428353 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g1282 31 221 AP2-EREBP Transcription Factor Family AT4G27950 42.347 1.42e-38 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lal18g1282 AP2 1.3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g1282 K13434 - gmx:100817278 269.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1282 18 15427514 15428353 Lal18g1282 18 15427514 15428353 ECH
Lal18g1282 18 15427514 15428353 Lal6g0347 6 2189643 2190467 LSH