Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1277 ATGTATTCCATGAAAGAGAAGAAAGAAGATTGCAAGGTAGAACATGGTTATGTAGAAACTGACCCAACTGGTCGCTATGGCAGGTTTGGAGATGTTCTTGGAAAAGGGGCAATGAAGACAGTGTACAAAGCAATTGATGAGGTCCTTGGAATAGAGGTAGCTTGGAACCAAGTTAAACTCAATGAGGCGCTTCGCACGCCCGATGATTTGCAGCGACTTTACTCAGAGGTTCATCTCCTCAGCACCCTCAAGCATCATTCGATCATACGATTCTATACTTCTTGGATTGATGTTGATAACAAGGCCTTCAACTTTGTTACAGAAATGTTCACATCCGGGTCCCTTAGAGAATACCGAAAGAAATATAAGCAAGTTAGCATAAAAGCGATAAAAAGCTGGGCTCGACAAATCTTACAAGGTCTTGTTTATTTACATGGGCATGATCCACCAGTAATCCACAGGGACCTGAAATGTGATAATATATTTGTCAATGGCCATCTTGGACAAGTGAAAATTGGTGACCTAGGACTAGCTGCAATTCTCCGTGGTTCTCAGCCAGCCCACAGTGTTATCGGCACCCCGGAGTTCATGGCACCAGAATTGTATGAAGAAGAATACAATGAACTTGTTGATGTGTACTCATTTGGCATGTGTGTATTGGAAATGTTTACATCTGATTATCCATATAGTGAATGTACTAACCCAGCACAGATTTACAAGAAAGTAACATCGGGTAAGCTACCAATGGCGTTTTTCCGGATTGAAGATATGGAAGCTCAGAAGTTTATTGGAAAGTGCCTAGGACCTGCATCAGAAAGACCATCAGCAAAAGATTTGTTGCTTCATCCTTTTCTTATGCCGGATGAATCGTTATCAACAACCAACTTTGGAATTCAAAAGCCACTTTTGAATAACATTGAGATGGGAAAACTTCACTTGAGTGATGATGTAACTAGGACTGAAATGAAAATAATAGGGAAGCTGAATCCTGAAGATGATACTATCTTTCTCAAAGTGCAAATTCCTGATAAGGATGGTTCTGTTAGGAATGTATTTTTTCCCTTTGAAATTTTCACTGATACCCCTATTGATGTTGCAATGGAGATGGTAAAGGAGTTGGAAATTTCTGATTGGGAGCCTTTTGAAATTGCAAATATGATTGAAGGAGAGATATCTGCTCTGCTACCACACAAGAAGGAAAGTAACTGTTTAGATGCATGGCATACATTTAGTTATAAAGTTGATGATGATGAAGGACCTTATCATCATTTCAGATCATTTTCATCTTCTTCATCATCCCAAGAATCAATAACTGGTTTAGTCAGTGGAAATTATTGGCCCCATGATGATTTACTTGATGATACCAGTTCAAGATGTTCTTCACAAGGGACATATTCCAACTTGAATTATTATTCTATGGATGACCAGGAGTACAATGTGTCTTCTATCGGAAAAGATAAACTACCGATCATTAAAAGTCACAAGTGCACGAGATTTTCACCTAATTGCGACCAATGTAAAGTTCTAGTAAGATCGCATACAGCTTCTACTAGTAAAAGTAAGAATGTGATAGACAATCACAGATTGACAAGGAACAATTCATTGATTGATCTAAGGAGCCAACTATTACACCGATCGCTGGTCGAGGAGGTTCACAAAAGACGGTTATTCAAGACAGTTGGTTCTGTAGAAAATATTGGATATCAGACACCTTATGATGTTTCAAGTCACTTCAAGAGTGGCAAGGGAGAAAAACTTAAGAGATGA 1767 0.3894 MYSMKEKKEDCKVEHGYVETDPTGRYGRFGDVLGKGAMKTVYKAIDEVLGIEVAWNQVKLNEALRTPDDLQRLYSEVHLLSTLKHHSIIRFYTSWIDVDNKAFNFVTEMFTSGSLREYRKKYKQVSIKAIKSWARQILQGLVYLHGHDPPVIHRDLKCDNIFVNGHLGQVKIGDLGLAAILRGSQPAHSVIGTPEFMAPELYEEEYNELVDVYSFGMCVLEMFTSDYPYSECTNPAQIYKKVTSGKLPMAFFRIEDMEAQKFIGKCLGPASERPSAKDLLLHPFLMPDESLSTTNFGIQKPLLNNIEMGKLHLSDDVTRTEMKIIGKLNPEDDTIFLKVQIPDKDGSVRNVFFPFEIFTDTPIDVAMEMVKELEISDWEPFEIANMIEGEISALLPHKKESNCLDAWHTFSYKVDDDEGPYHHFRSFSSSSSSQESITGLVSGNYWPHDDLLDDTSSRCSSQGTYSNLNYYSMDDQEYNVSSIGKDKLPIIKSHKCTRFSPNCDQCKVLVRSHTASTSKSKNVIDNHRLTRNNSLIDLRSQLLHRSLVEEVHKRRLFKTVGSVENIGYQTPYDVSSHFKSGKGEKLKR 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1277 588 ProSiteProfiles Protein kinase domain profile. 27 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal18g1277 588 ProSitePatterns Serine/Threonine protein kinases active-site signature. 151 163 IPR008271 GO:0004672|GO:0006468
Lal18g1277 588 PANTHER WNK KINASE 23 577 - -
Lal18g1277 588 SUPERFAMILY Protein kinase-like (PK-like) 28 286 IPR011009 -
Lal18g1277 588 Gene3D Phosphorylase Kinase; domain 1 11 108 - -
Lal18g1277 588 SMART serkin_6 27 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal18g1277 588 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 23 577 - -
Lal18g1277 588 CDD STKc_WNK 25 285 - -
Lal18g1277 588 Gene3D Transferase(Phosphotransferase) domain 1 110 292 - -
Lal18g1277 588 Pfam Protein kinase domain 31 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1277 Lal-Chr18 15369404 15373756 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g1277 17 575 MAP Kinase Kinase Kinase AT5G58350 60.764 0.0 643
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Lal18g1277 Pkinase 1.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g1277 K08867 - gmx:100272203 880.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1277 18 15369404 15373756 Lal18g1277 18 15369404 15373756 ECH
Lal18g1277 18 15369404 15373756 Lal6g0352 6 2233444 2237963 LSH
Lal5g1273 5 15448171 15453135 Lal18g1277 18 15369404 15373756 PCT
Lal18g1277 18 15369404 15373756 Lal5g1273 5 15448171 15453135 PCT