Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1271 ATGTCTTCTAGTGCTTTTCAATGGTTAAGCCTTATAGGCATGATCTGGCTCCAAGCAATAAATGGAACTAACACCGATTTCCCTGCTTATTCTTCCCAACTGAAGCAGCTTCTTTCCATGTCTCAAATGCAGCTCAATAACCTTGCTTTTGCCTCTGATGCTGGCAAACTTTTTGGCTTCTTTTCTGGCATAGCTTCTGCTTATCTCCCCCTTTGGCTTGTCCTCATGATAGGTTCAACTCTTGGGTTAATTGGTTATGGGAATAGCGTTTGTTGGATTATTATTGTCTGCTATGTTGTCACAATAAGGAACTTCTCATCTGATTCTCAAGTTGCTATTGGATTAACTACAAGTTACCAAGGATTAAGTGCCAAGATTTATACCAACATTGCTGATGTTATTTCTAGACACAACCAAGCTAGAACTTTTCTCTTTCTAAACTCTATCTTACCTTTTATAGTTTGCCTAATAACAGTTTTTCTAGTTACAGATATAGGAGTCATGAGGTCAAAATATATAGACGTTGGGTTTGTTGTTATGTTTGTTATTACAATTGTTACTGGAATATATGATGTGATCAGTAGCTTGCAAATTGTAACAAGTAATATATCTCCACTGAATAACCTGATTGGTATTCTAGTAACCCTTTTCTTACCTCTCTTAGTTTCAATTTCATTGAAGATCAAGGAACTAGTGGAGTATTGGAAAACCCAAACAGAAAGAATAAGGGTGTATCATTCTAGTGCAGAGGAGAGTACTAGAGAAAAGAGGAGTGATAATAATGAGGTGAAAGAGGGTGAAGATAACATAGAAATTCAAGAGTTGGGAATGAAGGATGAAATTGGAGTGAAGTTGATGGCAAGAAGAATAGATTTCTGGTTATATTTCTTTGTCTATCCTTTTGGTGCAACACTTGGATTAGTATTTCTTAATAATTTAGGACAAATTGCTGAATCCCGAGGTTGTTCTACTACTTCATCATTGGTGTCTTTGTCTTCTTCTTTTGGATTCTTTGGCCGTCTCATGTCAGCTATTATGGACTACTTTTCCAGCAGCAGGAGCAAGTATGCGATATCAAAATCAGCTTCTATGGCGGCATTGATGGCTCCAACAGCAATGGCATTCTTCTTACTTCTGAATAAAACTCACATTGCCCTCTACACCAGCACTGCCATAATTGGAGTGTGTACTGGAGCATTCACATCCATTTCTGTTTCCACCACCACCGAGTTATTTGGATCACAGAATTTCGCAGTGAACCATAATGTAGTGGTGGCAAATATTCCAATAGGTTCCTTTCTTTTTGGCTACTTGGCTGCCCTTGTTTACCATAAGGAAGGGCATGAACATGGAAAATGCATGGGCATGGATTGCTACAGAAAAACTTTCCTTGTCTGGGGTACCCTTTGTTTATTTGGCACTTTCTTGGCTTTGATTCTACATGCTAAGACTCGCAAGGTTTCACTACAAGAAATTTGGTAA 1482 0.3826 MSSSAFQWLSLIGMIWLQAINGTNTDFPAYSSQLKQLLSMSQMQLNNLAFASDAGKLFGFFSGIASAYLPLWLVLMIGSTLGLIGYGNSVCWIIIVCYVVTIRNFSSDSQVAIGLTTSYQGLSAKIYTNIADVISRHNQARTFLFLNSILPFIVCLITVFLVTDIGVMRSKYIDVGFVVMFVITIVTGIYDVISSLQIVTSNISPLNNLIGILVTLFLPLLVSISLKIKELVEYWKTQTERIRVYHSSAEESTREKRSDNNEVKEGEDNIEIQELGMKDEIGVKLMARRIDFWLYFFVYPFGATLGLVFLNNLGQIAESRGCSTTSSLVSLSSSFGFFGRLMSAIMDYFSSSRSKYAISKSASMAALMAPTAMAFFLLLNKTHIALYTSTAIIGVCTGAFTSISVSTTTELFGSQNFAVNHNVVVANIPIGSFLFGYLAALVYHKEGHEHGKCMGMDCYRKTFLVWGTLCLFGTFLALILHAKTRKVSLQEIW 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1271 493 Coils Coil 249 269 - -
Lal18g1271 493 Gene3D MFS general substrate transporter like domains 234 485 IPR036259 -
Lal18g1271 493 PANTHER MAJOR FACILITATOR SUPERFAMILY PROTEIN 87 490 - -
Lal18g1271 493 PANTHER MAJOR FACILITATOR SUPERFAMILY PROTEIN 2 87 - -
Lal18g1271 493 SUPERFAMILY MFS general substrate transporter 211 491 IPR036259 -
Lal18g1271 493 Pfam Nodulin-like 7 87 IPR010658 -
Lal18g1271 493 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 87 490 - -
Lal18g1271 493 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 2 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1271 Lal-Chr18 15330812 15333030 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g1271 1 491 Nodulin-like Gene Family AT2G30300 46.365 5.89e-140 410
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g1271 - - gmx:100808034 637.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1271 18 15330812 15333030 Lal18g1271 18 15330812 15333030 ECH
Lal18g1271 18 15330812 15333030 Lal22g0331 22 2105978 2108694 LSH