Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1265 ATGTTGCTCTCAGGGGACATTCCTCCGAACCAAACCATTTACATCAAAAACCTCAATGAAAAAATTAAGAAAGAAGAGTTGAAGAGATCTCTGTATTGCTTATTTTCTCAATATGGAAGGATTTTGGATGTTGTTGCTCTAAAGACACCTAAGCTTCGAGGACAGGCATGGGTTTGTTTTAGTGAAGTCACTGCTGCCAGCAATGCGGTGCGACAAATGCAAAACTTCCCATTTTATGACAAACCTATGCGAATTCAATACGCGAAAACAAAATCAGATTGTATTGCTAAAGAAGAGGGAAGTTACGTTCCAAGGGAAAAGAAAAAGAAACAAGAGGAGAAAGCTGAAAGAAAACGCCGGGCTGAAGATACACCACAACCTACTGTGCCAAATGGAACACATGGTGCAAGTAATGGTGCCTCAACAGCCTCATTCCGTCAAGGACCTGGTGCCCAAGAAACAGCTCCTCCTAACAATATATTATTCATAGAGAATTTGCCTCATGAAACTACTGGCAGGATGCTGGAAATGCTCTTCGAGCAATACCCAGGTTTTAAGGAAGTGCGCTTGATCGAAGCAAAGCCGGGTATCGCATTTGTAGATTTTGAAGACGATGTGCAATCATCTATGGCTATGCAGGCTCTTCATGGCTTCAAAATCACCCCTCAAAATGCCATGATTATAACTTTTGCTAAGAAGTAG 702 0.4174 MLLSGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRILDVVALKTPKLRGQAWVCFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCIAKEEGSYVPREKKKKQEEKAERKRRAEDTPQPTVPNGTHGASNGASTASFRQGPGAQETAPPNNILFIENLPHETTGRMLEMLFEQYPGFKEVRLIEAKPGIAFVDFEDDVQSSMAMQALHGFKITPQNAMIITFAKK 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1265 233 MobiDBLite consensus disorder prediction 98 157 - -
Lal18g1265 233 Gene3D - 5 114 IPR012677 -
Lal18g1265 233 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 11 90 IPR000504 GO:0003723
Lal18g1265 233 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 159 233 IPR000504 GO:0003723
Lal18g1265 233 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A 5 233 - -
Lal18g1265 233 MobiDBLite consensus disorder prediction 126 154 - -
Lal18g1265 233 CDD RRM2_U1A_like 157 229 - -
Lal18g1265 233 MobiDBLite consensus disorder prediction 98 124 - -
Lal18g1265 233 CDD RRM1_U1A_like 12 89 - -
Lal18g1265 233 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 13 83 IPR000504 GO:0003723
Lal18g1265 233 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 161 220 IPR000504 GO:0003723
Lal18g1265 233 Gene3D - 150 233 IPR012677 -
Lal18g1265 233 SUPERFAMILY RNA-binding domain, RBD 9 222 IPR035979 GO:0003676
Lal18g1265 233 SMART rrm1_1 12 86 IPR000504 GO:0003723
Lal18g1265 233 SMART rrm1_1 160 229 IPR000504 GO:0003723
Lal18g1265 233 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 5 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1265 Lal-Chr18 15278034 15281314 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g1265 4 233 Eukaryotic Initiation Factors Gene Family AT1G71770 21.610 9.11e-07 47.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1265 18 15278034 15281314 Lal18g1265 18 15278034 15281314 ECH