Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1259 ATGGCAACAGACGCAACAACCAAGTTCCAAAACCCTGATTTCCGTCCCGATTTCCATCCAGAATTAACGCCGTCAACTCACGACGGCCTCCACTTCTGGCAGTTCATGATTGCCGGATCCGTCGCCGGTTGCATAGAGCACATGGCTATGTTCCCCGTTGACACCGTCAAGACCCACATGCAAGCCCTAGGATCCTGTCCCATCAAATCCGTTAGTGTCCGTCAAGCCCTAAATTCAATCCTTAAATCCGAGGGTCCCTCCGCCCTTTACCGCGGCATCGCCGCCATGGGCCTCGGCGCAGGTCCTGCACACGCCGTCTATTTTTCCGTCTACGAAACTTGCAAGAAACGTTTCTCAAATGGGGACCCTAATAACTCATTGGCACACGCTGCTTCCGGCGTTTGCGCCACCGTGACGAGTGATGCTGTGTTTACGCCGATGGATATGGTAAAGCAGAGGCTTCAACTTAGTAATAGTGGGTATAAGGGTGTTTGGGACTGTGTGAAGAGGGTGATGAGTGAGGAAGGGTTTGGTGCATTTTATGCGTCGTATAGGACTACTGTGTTGATGAATGCACCATTTACTGCGGTGCATTTCGCCACGTATGAGGCTGCGAAGAAGGGCCTCGTTGAGGTGTCACCGGAAAGTGTTGATGATGAGCAGTGGGTTGTTCATGCCACGGCTGGTGCTGCTGCTGGTGCTTTGGCTGCTGTGGTTACAACGCCGCTCGATGTGGTTAAAACTCAATTGCAGTGTCAGGGCGTTTGTGGATGTGATAGATTCAAAAGTGGTTCAATTGGAGATGTTATTAAAACAATTTTGAAAAAGGATGGATACAAAGGGCTCATGCGAGGATGGATTCCGAGAATGCTATTTCATGCTCCTGCAGCTGCTATTTGCTGGTCTACATATGAAGCTGGAAAATCATTTTTCCAAGATTTTAATCAGCAGAAAGACACTGGAACTGTCACTTAG 975 0.4944 MATDATTKFQNPDFRPDFHPELTPSTHDGLHFWQFMIAGSVAGCIEHMAMFPVDTVKTHMQALGSCPIKSVSVRQALNSILKSEGPSALYRGIAAMGLGAGPAHAVYFSVYETCKKRFSNGDPNNSLAHAASGVCATVTSDAVFTPMDMVKQRLQLSNSGYKGVWDCVKRVMSEEGFGAFYASYRTTVLMNAPFTAVHFATYEAAKKGLVEVSPESVDDEQWVVHATAGAAAGALAAVVTTPLDVVKTQLQCQGVCGCDRFKSGSIGDVIKTILKKDGYKGLMRGWIPRMLFHAPAAAICWSTYEAGKSFFQDFNQQKDTGTVT 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1259 324 PANTHER MITOFERRIN-1-RELATED 1 319 - -
Lal18g1259 324 Pfam Mitochondrial carrier protein 30 120 IPR018108 -
Lal18g1259 324 Pfam Mitochondrial carrier protein 220 313 IPR018108 -
Lal18g1259 324 Pfam Mitochondrial carrier protein 125 210 IPR018108 -
Lal18g1259 324 Gene3D Mitochondrial carrier domain 125 324 IPR023395 -
Lal18g1259 324 ProSiteProfiles Solute carrier (Solcar) repeat profile. 30 117 IPR018108 -
Lal18g1259 324 SUPERFAMILY Mitochondrial carrier 28 305 IPR023395 -
Lal18g1259 324 PRINTS Mitochondrial carrier protein signature 35 48 IPR002067 GO:0055085
Lal18g1259 324 PRINTS Mitochondrial carrier protein signature 48 62 IPR002067 GO:0055085
Lal18g1259 324 PRINTS Mitochondrial carrier protein signature 139 157 IPR002067 GO:0055085
Lal18g1259 324 PRINTS Mitochondrial carrier protein signature 181 199 IPR002067 GO:0055085
Lal18g1259 324 PRINTS Mitochondrial carrier protein signature 229 251 IPR002067 GO:0055085
Lal18g1259 324 PANTHER MITOCHONDRIAL CARRIER PROTEIN, EXPRESSED 1 319 - -
Lal18g1259 324 ProSiteProfiles Solute carrier (Solcar) repeat profile. 124 208 IPR018108 -
Lal18g1259 324 ProSiteProfiles Solute carrier (Solcar) repeat profile. 220 310 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1259 Lal-Chr18 15235501 15238247 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g1259 1 320 Chloroplast and Mitochondria Gene Families AT1G07030 75.305 1.19e-177 493
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g1259 K15113 - gmx:100802640 595.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1259 18 15235501 15238247 Lal18g1259 18 15235501 15238247 ECH
Lal18g1259 18 15235501 15238247 Lal6g0367 6 2337820 2343384 LSH