Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1247 ATGCAAAGCCAATCCGAGTCACCCAACAAGCCCATCAACTCACTGAGTCAACTCGTTCAAAACATGTTATCCAACAACAATAGCAACATCATGCTTGCAGCCATTGTTTCCTTGCTCCTAGTCATCCTCTTTGTCCTCCTTCTCCACATTTACGCCAAGTTGTTCTTAGCTCCGGCAATACCTGGCCGCCAGCGGCGTCGAACTCTTTCCACCGTCGAACCTTCCCGGTTCCACCACTTCCACTTCATAGAAGCGTCACCTATTTCGAACAAAGGACTTGACTCATCAATAGTTTCGAGGATTCCCATGTTTGTGCATGAAGCAGAATCAGAAGAATTGGAGTGTGTGATTTGTTTGAGTGGTTTTGAGGAAGGTGAGATTGGAAGAAGCTTATCAAAATGTGGCCACACTTTTCATTTGGAATGCATTGATATGTGGCTAAGTTCACATTGCAATTGTCCAATTTGTAGAGCTACTATTGTGGTTCAAAACAATGATGGTGATAATGATGGTGTGGTTGAGATTGTTATTGAAAGTCCAAGTTATGAGATTAGTGAGAGTGGGAGTGATAATTATGGAAATAGTGGGGTTACTTTGTTGGATGATTATGCTTCTTCATCTTTCTGTAAAAATGTTTTGATGACAATCTATGAAGATAGTACAACTTCCAAACTGCAAGGAAAGAAGGAAGTGAAAATTATGAACTATGTACAGTCTTCCATGTTTTCTGCTATGAGCCCTAACGTTGCAGGTTGCAACAAAGGTGGTGACCCCACTCCCCCAAAGGAGAAGTCTATTACTACATCATCCATTAATTCTGATGTACCAATCGAAAGACTATGA 843 0.414 MQSQSESPNKPINSLSQLVQNMLSNNNSNIMLAAIVSLLLVILFVLLLHIYAKLFLAPAIPGRQRRRTLSTVEPSRFHHFHFIEASPISNKGLDSSIVSRIPMFVHEAESEELECVICLSGFEEGEIGRSLSKCGHTFHLECIDMWLSSHCNCPICRATIVVQNNDGDNDGVVEIVIESPSYEISESGSDNYGNSGVTLLDDYASSSFCKNVLMTIYEDSTTSKLQGKKEVKIMNYVQSSMFSAMSPNVAGCNKGGDPTPPKEKSITTSSINSDVPIERL 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1247 280 Pfam Ring finger domain 114 157 IPR001841 -
Lal18g1247 280 SUPERFAMILY RING/U-box 106 164 - -
Lal18g1247 280 PANTHER - 7 217 - -
Lal18g1247 280 MobiDBLite consensus disorder prediction 262 280 - -
Lal18g1247 280 MobiDBLite consensus disorder prediction 249 280 - -
Lal18g1247 280 ProSiteProfiles Zinc finger RING-type profile. 115 157 IPR001841 -
Lal18g1247 280 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 77 162 IPR013083 -
Lal18g1247 280 SMART ring_2 115 156 IPR001841 -
Lal18g1247 280 CDD RING-H2_EL5_like 114 157 - -
Lal18g1247 280 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 7 217 IPR044675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1247 Lal-Chr18 15151932 15155090 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g1247 29 160 Rapid Response to Elicitors AT3G16720 38.732 1.23e-26 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g1247 - - aprc:113874423 219.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1247 18 15151932 15155090 Lal18g1247 18 15151932 15155090 ECH
Lal18g1247 18 15151932 15155090 Lal22g0105 22 645226 650302 LSH
Lal5g0968 5 11845751 11846449 Lal18g1247 18 15151932 15155090 PCT
Lal3g0687 3 5490683 5491444 Lal18g1247 18 15151932 15155090 PCT
Lal18g1247 18 15151932 15155090 Lal5g0968 5 11845751 11846449 PCT
Lal18g1247 18 15151932 15155090 Lal3g0687 3 5490683 5491444 PCT