Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1243 ATGGGTTCTTGGGTGAGAGGGAAATGCATCGGTAAGGGCGCGTTTGGCACCGTGGATATTGCGGTTGATAAATCTAACGGTCAAGTATTTGCGGTTAAGTCAGTTGATCTTAAAACGGGTCTACCGGGTCAGATAGAGGCGCTGGAGAACGAAATTAAGATTCTACGCCAAATGAATTCGCCTCACGTGATTAACATCCTCGGCGATGATATCACGTGCGAGGGAACGACGTCGTATCAGAATCTTCACTTGGAGTATATGCCAGGTGGCACCGTCGGTGACATGGACCATGCTGACGTGGATGAATTGTTAGTGAGGCGCTACGCTCGGTGTCTGGTTCACGCGCTTCGCCACGTTCACGAGCGAGGTTTCGTGCATTGCGACGTGAAAGGAAGGAACGTGCTCCTCGCCGGTGAAGGCTCCGTCGCGAAGCTCGCTGATTTTGGCTCCGCAGTGGAGTTCACCGGCGGGGATCATGTACTGCCACGTGGAAGTCCTATGTGGATGGCGCCGGAGGTGATTCGCCGGGAGTATCAGGGGCCGGAATCCGACGTATGGTCTCTAGGATGCACCGTGATCGAGATGGTTACCGGGAGAATGCCGTGGGAGGACGACGGCTTTGACACGCTGAGTCGAATTGGATTCTCCGGCGAGTTACCGGAGTTTCCTGCTGAATTATCTGAGTTAGGGTGCGATTTTCTCGAGAAATGTCTAAGAAGGGAGCGAAAAGAAAGATGGAGCTGTGATCAGCTACTTCAGCACCCATTTTTGGTGATGGATTCTTCCAATAACGTTACAGAATCGTCGCCACGGTGCGTTTTGGACTGGTTTGACTCAGAATTCACCGAGTCAGAAGAAGAGGAGAAGGAATTGGATAGTGAAAGTGAAAATTCAGCCAAGGGTAGGATCAGTAAATTAGCGACGGGGGTAAGGGTAAATTGGGAAATAGAGGGATGGGTGGAGGTAAGGGCAATTATGTCACCTGAAGTAGAATTATCAACTACGATGGAAGGGTGTGAAGATGAGAAAGAAATAGGGGCAGATAGGGAAATTGGGAATGTGGGAAGTGGTTTGGAATATTCGGATTCTGGAGGATTAGGAAATGGAAGGGTAAAACGGGAAATGCGGAGAAATGGGAGGTTGGTGTGGCGGTGTGAATGTGAGGAGTGTAACCGCAACCGTAAGAAGAGGGTAATAGTTGGAGGTGGTTATGGTTGGAGATGTCGTAGTTTTGTTGTTAGGTTTGATGAGTCACACTTTGGATTAGACAGCAGCAATGGTTCAAACTAG 1290 0.4969 MGSWVRGKCIGKGAFGTVDIAVDKSNGQVFAVKSVDLKTGLPGQIEALENEIKILRQMNSPHVINILGDDITCEGTTSYQNLHLEYMPGGTVGDMDHADVDELLVRRYARCLVHALRHVHERGFVHCDVKGRNVLLAGEGSVAKLADFGSAVEFTGGDHVLPRGSPMWMAPEVIRREYQGPESDVWSLGCTVIEMVTGRMPWEDDGFDTLSRIGFSGELPEFPAELSELGCDFLEKCLRRERKERWSCDQLLQHPFLVMDSSNNVTESSPRCVLDWFDSEFTESEEEEKELDSESENSAKGRISKLATGVRVNWEIEGWVEVRAIMSPEVELSTTMEGCEDEKEIGADREIGNVGSGLEYSDSGGLGNGRVKREMRRNGRLVWRCECEECNRNRKKRVIVGGGYGWRCRSFVVRFDESHFGLDSSNGSN 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1243 429 Gene3D Transferase(Phosphotransferase) domain 1 1 314 - -
Lal18g1243 429 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 14 3 341 - -
Lal18g1243 429 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Lal18g1243 429 CDD STKc_MAPKKK 3 257 - -
Lal18g1243 429 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 341 - -
Lal18g1243 429 SUPERFAMILY Protein kinase-like (PK-like) 2 272 IPR011009 -
Lal18g1243 429 ProSiteProfiles Protein kinase domain profile. 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal18g1243 429 SMART serkin_6 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal18g1243 429 Pfam Protein kinase domain 6 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1243 Lal-Chr18 15130212 15131940 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g1243 4 342 MAP Kinase Kinase Kinase AT2G30040 59.718 9.11e-135 393
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Lal18g1243 Pkinase 8.3e-54 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1243 18 15130212 15131940 Lal18g1243 18 15130212 15131940 ECH
Lal18g1243 18 15130212 15131940 Lal6g0375 6 2390701 2392092 LSH