Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1242 ATGTCGTGCTCCGTCGCGGTTTCAAGTTCTCCGGTGTTCTCACCTTCTTCGTGTCTTTTTTGTACAAAGCCTTCTATTTTATCTTCCTCTCCAGATTCTCATACCCTTTCTCTTTCTCATCTCAAACCTTCTTCTTCTGGAACGACGTCGTGTTGTTCTTCTCCTTCTAATTCTACTTCTTCGCCTTCTTCTCCTTTTCGGTTTCGTCTTTCTAAGCCCCCTGTTATATCCTCTACATCTCCAAACGGAGCTGTTTTGAAGAGGAAGAGGCCGGCTAGGCTTGATATACCGGTTTCTTCTCTCACATTTGGGGTTCCGCCGACGCCGTCTGCGGTGGCTAGGGATGTGGTTGAGGCTGAGGGAGATGGGTTTTCTGTTTATTGCAAGAGAGGAAGGAGAGAGTACATGGAGGACCGTTATTCTGCTGCTGATAATCTACGTGGTGAATCCAAAATGGCTTTTTTCGGTGTATTTGATGGGCATGGAGGTGCGAAAGCCGCAGAATTTGCTGCTAAGAACTTAGAAAATAATGTCTTGGATGAAGTGATCATTAGTGATGAAGAAGATATGAAGGAGGCAGTGAAGCGTGGTTATCTCAACACTGATTCTGATTTCTTAAAAGAGGATCTCAATGGTGGTTCCTGCTGTGTGACAGCACTGATTAGAAATGGTAACCTTGTGGTGTCCAATGCTGGTGATTGTCGAGCTGTCATAAGCAAAGGCGGTGTCGCAGAGGCCCTAACATCGGACCATCGACCTTCAAGGGAAGATGAAAAAGACAGAATTGAGACTCTGGGTGGCTATGTTGATTTATGCCGTGGTGTTTGGAGGATCCAGGGATCTCTTGGTGTATCTAGAGGAATCGGAGATCGACACATGAAACAATGGGTGACAGCAGAACCTGAGACCAAAGTTCTCAGAATTGAACCTGAACATGACTTGTTAATCTTAGCTTCGGATGGATTATGGGATAAGGTTAGTAATCAGGAAGCAGTAGATATAGCTCGGCCTTTTATCGTCGGGAACAAGAAACCACAACCATTGTTGGCTTGTAAAAAGCTTGTAGATTTGTCGGTTTCGCGAGGCTCCATGGATGATACAAGTGTTATGCTAATCCAGTTGAAGCACTATATTTAG 1137 0.4494 MSCSVAVSSSPVFSPSSCLFCTKPSILSSSPDSHTLSLSHLKPSSSGTTSCCSSPSNSTSSPSSPFRFRLSKPPVISSTSPNGAVLKRKRPARLDIPVSSLTFGVPPTPSAVARDVVEAEGDGFSVYCKRGRREYMEDRYSAADNLRGESKMAFFGVFDGHGGAKAAEFAAKNLENNVLDEVIISDEEDMKEAVKRGYLNTDSDFLKEDLNGGSCCVTALIRNGNLVVSNAGDCRAVISKGGVAEALTSDHRPSREDEKDRIETLGGYVDLCRGVWRIQGSLGVSRGIGDRHMKQWVTAEPETKVLRIEPEHDLLILASDGLWDKVSNQEAVDIARPFIVGNKKPQPLLACKKLVDLSVSRGSMDDTSVMLIQLKHYI 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1242 378 CDD PP2Cc 123 374 IPR001932 -
Lal18g1242 378 PANTHER PROTEIN PHOSPHATASE 2C FAMILY PROTEIN-RELATED 3 377 - -
Lal18g1242 378 PANTHER PROTEIN PHOSPHATASE 2C 3 377 IPR015655 GO:0004722|GO:0006470
Lal18g1242 378 SMART PP2C_4 116 372 IPR001932 -
Lal18g1242 378 Gene3D - 123 377 IPR036457 -
Lal18g1242 378 MobiDBLite consensus disorder prediction 37 88 - -
Lal18g1242 378 SUPERFAMILY PP2C-like 124 375 IPR036457 -
Lal18g1242 378 MobiDBLite consensus disorder prediction 37 84 - -
Lal18g1242 378 Pfam Protein phosphatase 2C 124 366 IPR001932 -
Lal18g1242 378 ProSiteProfiles PPM-type phosphatase domain profile. 123 374 IPR001932 -
Lal18g1242 378 ProSitePatterns PPM-type phosphatase domain signature. 154 162 IPR000222 GO:0043169
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1242 Lal-Chr18 15119142 15121475 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g1242 1 378 PP2C-type Phosphatase Gene Family AT2G30020 63.750 4.65e-167 471
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g1242 K17506 - gmx:100797934 593.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1242 18 15119142 15121475 Lal18g1242 18 15119142 15121475 ECH
Lal18g1242 18 15119142 15121475 Lal22g0351 22 2252511 2254903 ECH
Lal18g1242 18 15119142 15121475 Lal22g0351 22 2252511 2254903 LSH
Lal18g1242 18 15119142 15121475 Lal6g0376 6 2397560 2400410 LSH
Lal11g0937 11 12673434 12676066 Lal18g1242 18 15119142 15121475 PCT
Lal18g1242 18 15119142 15121475 Lal11g0937 11 12673434 12676066 PCT