Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1238 ATGGAGGAATATGGAAGACAAGAAGGGCTGCACCATAAAATATCCGCCTTGCTTGAATTTTCGGCTGCTGATGATCTAATTGGATTCAAAGATGCGGTCGAAAAAGAGGGTCATGATGTTGATTGGGTAGGATTGTGGTATGGAAGGAGGGTAGGTTCAAACAAAGTGGGTTATGAAGAGAGGACTCCTCTTATGGTTGCTTCTATGTTTGGAAGCCTAAGTGTATTAACCTATATTCTTCGAACAGGTTGTGTTGATGTTAACCGGGCCAGTAGATCAGATGGGGGTACTGCTCTTCATTGTGCTGTTGCTGGGGGTTCTGCTGCTTCCCTTGAGATTGTCAAGCTTTTGCTTGATGCATCTGCAGATGTTAACGCTGTTGATGCCAACGGTAACCGACCCTGTGACTTGATTTTCTCTGTGGCTAATCCCATCTTCAATTCAAGGAAAAGAATGCTAAAATCCTTGCTGGAAGGTAAGCACGGTACTTATCAGGCATGTCTTACATTTGAGGAAATGGTAGGCCAAAGTGAGGAACAACAAAGGCAAGATAGGAACACGCCTCATGTTTCTAAAGATGGGACTGAGAAGAAAGATTATCCTGCTGACCTCTCCCTTCCAGGCATAAAGAATGGGATATATAGTACCAATGAGTTTAGGATGTATACATTCAAAGTGAAGCCTTGTTCGAGGGCTTATTCTCATGATTGGACTGAGTGCCCTTTTGTTCATCCAGGGGAGAATGCAAGGCGACGTGATCCAACAAAGTATCCTTATAGCTGTGTCCCTTGCCCTGAGTTTCGGAAGGGATTGTGCAGCAAGGGGGATGCCTGTGAGTACGGACATGGTATTTTTGAGTGCTGGCTTCACCCTGCCCAGTATCGGACACGGCTTTGTAAGGATGAGAGTGCATGTACGAGAAAGGTTTGCTTCTTTGCTCATAAGCTCGAGGAGCTTCGACCCCTGTATGTTTCTACTGGATCAGCTATTCCTTTTCCTAGATCATATTCACCTAATAATACTTCTTCTTTGGAGATGGGTTCAGTTAGCCCAATCCCTTTCGGTTCTCTATCTGTCATGATACCACCTTCCTCAACACCACCTTTGACTCCTAGTGGAGCATCGTCTTCTATGGCTGGAGCCACGTGGCAGAATCAACCTGATGTTACGGTCCCTGCCCTACAGCTTCCCAAGAGCAGATTGAAGACTGCGTTACCTACTAGAAATATTGATTTAGATATTAAATTGCTTGAACTTGAAAATCGTCGACTCAGGCAGCAGCTAATGATGGATGAGATGTCTAGTCTTTCCTCCCCCTCTAACTGGAAAAATTCCATGCCTAATAATAGTCCATCCTTTCCTGTTTCTTCTTTTGGCGACCGTGCTGGTGAATTAAATAGGCTTTCAGGAGTGAAGCCTGCTAACCTTGAAGACAGTTTTGGGTCTCTTGATCCACCAATTTTGTCCAAGTTCGCCGAAATCTCATTTGACGCTGCAGGTTCTCAGTTACAGTCTCCAACTAGAACCCAGATGCATCAGAATGTGAACCAGCACCCACAAAGCTATTCAAATGTGATCGGATCACCGCACTTTACGGCTGATCAATCTGGTAATGCAGCTACAGTGGCTTTTAATTCAAGAATGGCTGTGTTTTCAAAGCAGAGCCAGAGCATTATTGAGCGTAATGTGGTGAACCGACATTCTGAGTTTTCTTCTCCTGCAACTCCTGAAGCAGCGAAGCATACCTTTTCTGATTGGGGATCCCCTGATGGAAAATTAGACTGGGCCATAAATGGAGAAGAACTGAATAAGCTGAGGAAATCTGCTTCTTTTGGATTCGGAAGCAACAATGCCCCTTTAACGATAGCTACAAATACAGTGCTTGCAAACATTGATGAACCAGATTTGTCTTGGGTCCACTCACTTGTGAATGATGATCCGTTGCAGGAATATGATCAGTTTAATGTTGAGGATCGGCAGCAACAGCGACAATACCATCTTCACAATGGAACAAATGTTGTTCCAGCTTGGTTTGAGCAAATGTACATGGACCAGGAGCAGATGGTGGCGTAA 2073 0.4457 MEEYGRQEGLHHKISALLEFSAADDLIGFKDAVEKEGHDVDWVGLWYGRRVGSNKVGYEERTPLMVASMFGSLSVLTYILRTGCVDVNRASRSDGGTALHCAVAGGSAASLEIVKLLLDASADVNAVDANGNRPCDLIFSVANPIFNSRKRMLKSLLEGKHGTYQACLTFEEMVGQSEEQQRQDRNTPHVSKDGTEKKDYPADLSLPGIKNGIYSTNEFRMYTFKVKPCSRAYSHDWTECPFVHPGENARRRDPTKYPYSCVPCPEFRKGLCSKGDACEYGHGIFECWLHPAQYRTRLCKDESACTRKVCFFAHKLEELRPLYVSTGSAIPFPRSYSPNNTSSLEMGSVSPIPFGSLSVMIPPSSTPPLTPSGASSSMAGATWQNQPDVTVPALQLPKSRLKTALPTRNIDLDIKLLELENRRLRQQLMMDEMSSLSSPSNWKNSMPNNSPSFPVSSFGDRAGELNRLSGVKPANLEDSFGSLDPPILSKFAEISFDAAGSQLQSPTRTQMHQNVNQHPQSYSNVIGSPHFTADQSGNAATVAFNSRMAVFSKQSQSIIERNVVNRHSEFSSPATPEAAKHTFSDWGSPDGKLDWAINGEELNKLRKSASFGFGSNNAPLTIATNTVLANIDEPDLSWVHSLVNDDPLQEYDQFNVEDRQQQRQYHLHNGTNVVPAWFEQMYMDQEQMVA 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1238 690 PANTHER UNKEMPT FAMILY MEMBER 6 689 IPR045234 -
Lal18g1238 690 Gene3D - 45 189 IPR036770 -
Lal18g1238 690 Pfam Ankyrin repeats (3 copies) 52 128 IPR002110 GO:0005515
Lal18g1238 690 SUPERFAMILY Ankyrin repeat 38 137 IPR036770 -
Lal18g1238 690 ProSiteProfiles Ankyrin repeat profile. 94 129 IPR002110 GO:0005515
Lal18g1238 690 SMART ANK_2a 59 89 IPR002110 GO:0005515
Lal18g1238 690 SMART ANK_2a 94 126 IPR002110 GO:0005515
Lal18g1238 690 MobiDBLite consensus disorder prediction 175 201 - -
Lal18g1238 690 ProSiteProfiles Ankyrin repeat region circular profile. 94 128 - -
Lal18g1238 690 ProSiteProfiles Zinc finger C3H1-type profile. 258 285 IPR000571 GO:0046872
Lal18g1238 690 Gene3D - 259 321 - -
Lal18g1238 690 SMART c3hfinal6 293 316 IPR000571 GO:0046872
Lal18g1238 690 SMART c3hfinal6 258 284 IPR000571 GO:0046872
Lal18g1238 690 MobiDBLite consensus disorder prediction 177 200 - -
Lal18g1238 690 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 66 6 689 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1238 Lal-Chr18 15083245 15085317 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g1238 12 685 C2H2 Transcription Factor Family AT5G12850 37.500 2.38e-129 397
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lal18g1238 Ank_2 8.6e-09 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g1238 - - aprc:113846970 955.666
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1238 18 15083245 15085317 Lal18g1238 18 15083245 15085317 ECH