Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1235 ATGAATCCATTGACGCTGGTGAAACGAATTCAGAACATAAACTCAAAAGAAGCAGCACTTGGAATCGGCGAAGAAGCTTCATGGCACTCCAAATACAAAGATTCCGCTTACATTTTCGTCGGTGGCATCCCCTTCGATCTCACCGAAGGTGACCTCATCGCCGTTTTCGCTCAGTATGGTGAAGTCGTCGATGTTAATCTCGTCAGAGATAAAGGTACCGGAAAATCTAAGGGTTTTGCATTCATTGCATATGAAGATCAAAGAAGCACAACTCTCGCCGTTGATAATCTGAATGGAGCACAGATTTTAGGGAGAATAGTTAGGGTTGATCATGTGGACAAGTATAAGAAGAAGGAAGAGGAGGATGAAGAGACAGAGCGCCAGAAAAGGGAGGCTCGTGGTGTCTGTCGAGCTTTCCAAAGAGGCGAATGTACTCGTGGAGCTGGATGCAAGTTTTCTCATGATGAACAACGAGCTGCAAACACTGGTTGGGGTCAGGAGGATAACAGTTCAAAATGGGGTAATGACAAATTTGACGGTCCCAAAAAAGAGATAAGATCTGTCAACAACCAATCAAATCGTGTTCCAGAAACTAGAGACAGAGATTCACGCTCCAGAGCCCATCACAATGAGAGGGGATTAGACAGCCATCGGAGGGAGGAAATGCTGCGGAGGCATGATGACAATGATATATTTGAGGGTAGAGAAAATAATACTAGAAGGGAAGAAAAGAAATCAAGAAGGCACGGAGAAGATGATGAATTTGAACGCAGGTCAAGAGAAGATCGACATAGGAGAGAAGAAAATAGGTCAAGAAGGAATGATTATGATGATATGGAACCGGACCCAAGAGATCATCACAGGAGGGAAGACAGGAGTTCAAGAAAGGCAGATGATGTTGAGTTTGAACCTAAGTCTAGAGATTCTGATACAAGGGAGGATGAAAGACCCAGGAGGCAGGATGATGATGATGATTTTGGACATAGATCAAGAGAAGCTCACGTTAACCGGGAAGAAAGGAGATCAAGAAAGCACAATGAAGATTATGATAGGAAGCAAGATAGCAGATCATATAAAACTTATGAATCAGAGTCAAAAGTAAGATATGATGATGCGAGAGAAGAGAAAAGGTCAAGAAGGTAA 1143 0.4304 MNPLTLVKRIQNINSKEAALGIGEEASWHSKYKDSAYIFVGGIPFDLTEGDLIAVFAQYGEVVDVNLVRDKGTGKSKGFAFIAYEDQRSTTLAVDNLNGAQILGRIVRVDHVDKYKKKEEEDEETERQKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGQEDNSSKWGNDKFDGPKKEIRSVNNQSNRVPETRDRDSRSRAHHNERGLDSHRREEMLRRHDDNDIFEGRENNTRREEKKSRRHGEDDEFERRSREDRHRREENRSRRNDYDDMEPDPRDHHRREDRSSRKADDVEFEPKSRDSDTREDERPRRQDDDDDFGHRSREAHVNREERRSRKHNEDYDRKQDSRSYKTYESESKVRYDDAREEKRSRR 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1235 380 PANTHER RNA-BINDING MOTIF PROTEIN, X-LINKED 2 1 302 - -
Lal18g1235 380 ProSiteProfiles Zinc finger C3H1-type profile. 130 157 IPR000571 GO:0046872
Lal18g1235 380 Gene3D - 133 218 - -
Lal18g1235 380 SMART rrm1_1 37 110 IPR000504 GO:0003723
Lal18g1235 380 MobiDBLite consensus disorder prediction 161 380 - -
Lal18g1235 380 Coils Coil 115 135 - -
Lal18g1235 380 SUPERFAMILY CCCH zinc finger 133 155 IPR036855 GO:0046872
Lal18g1235 380 SMART c3hfinal6 132 156 IPR000571 GO:0046872
Lal18g1235 380 SUPERFAMILY RNA-binding domain, RBD 28 116 IPR035979 GO:0003676
Lal18g1235 380 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 135 155 IPR000571 GO:0046872
Lal18g1235 380 Gene3D - 26 132 IPR012677 -
Lal18g1235 380 PANTHER RNA-BINDING MOTIF PROTEIN, X-LINKED 2 1 302 - -
Lal18g1235 380 MobiDBLite consensus disorder prediction 195 380 - -
Lal18g1235 380 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 106 IPR000504 GO:0003723
Lal18g1235 380 CDD RRM_ist3_like 27 113 IPR045844 GO:0000398|GO:0003723
Lal18g1235 380 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 114 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1235 Lal-Chr18 15073849 15076835 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g1235 38 109 Eukaryotic Initiation Factors Gene Family AT3G16380 36.111 2.62e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g1235 K13107 - gmx:100814734 456.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1235 18 15073849 15076835 Lal18g1235 18 15073849 15076835 ECH