Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1234 ATGAGGCCACTTTTGGCACAATATGTGGCGGGAAACAAATCAAAGCGCGTTCTTCAACATTCTATCATCAAATCAAATTTCTCATACCATTCATCGCATCGATTCGATCCCAATTTTTCTACAATGCCATCAATCACTTCCAATTCAACTCCTCATAACCGCATTTTGAGATCTCACGCCGCAGTTTTGAAGCCTCCGATCACTTCCCCGTCCAAACCTACGCTTCCGTCACGGTGCAGCAATGAAAATGATGTTGTTTCGATTCATTCTGGTGATAAAAAAGCTGAATCCGATAGTGTTTATGCAAAACCAGATTCTGATCATATAGTAGCCACTGCTTTGGATTGCACTCCTCAGACGCATAAAGTGAGATCTCGTGCGGTATTGGAGGCTCCAACATTCCCCTCAGCAACTCATTCACCGTCTAAATGGAAATCACAGAGACGATGCATCAGTGCAAGCCCCCACACTTCTCTAATTGAAAGCAAGGTTGATTCGGTTTGCGGTGCTGATACACAAGCTAAATCAGGTGCTGGCAAATTCAAATGGAATCCCAATGATGGTGAGCAACTGAGGGTGGTGAAGGAGGCATTGCACGTTTCCACTGAACCTTCTAGAATTGCATGCCGTGAGGATGAGCAGAATACAGTGTTGGAGTTTTGTAAGGCATGTGTTGAGCAAGAGAAGGCTGGGAGCTTATACATTTGTGGATGCCCAGGAACAGGAAAATCATTAACTATGGAGAGAGTGAAAGGGCTCTTACTCAATTGGGCTACAGAGTCAGGCTTCATGCGCCCAGATGTTTTATCTGTAAACTGTACTTCCTTTGTCAACACATCTGACATTTTCACCAAGATACTTGAGTTAAACCAACCACCTGGGAAAAAGAGTTCAGCGACACCCTTAAGACAACTCCAGAACACGTATTCTCAAAAGTCGTCTAGAAATAACATGGTATTGATACTTGCTGATGAATTAGATTATCTAATAACCAAAGACAGGGCTGTGCTCCATGATCTTTTCATGCTCACCACCTTACCATTTTCCAGATGTATTTTAATAGGGATAGCAAATGCGATTGACCTGGCTGATCGTTTTCTTCCAAGGCTTGCATCATTAAACTGCAAGCCTATTGTTGTAACTTTTCGGGCCTACTGTAAAGACCAGATCCTTAGGATTCTACAAGAAAGACTAAGTGAGCTTCCTTACATTGTCTTCCAACATCAAGCACTAGAACTCTGTGCTAGGAAAGTTGCTGCAGCTTCTGGAGATATGCGGAAAGCCCTTTGCATATGCAGGAGTGCGATAGAGATGCTAGAAGCTGAGATTAGAGAATCTACCAGCAAGTCAAATACTTCATTGGAAGAGAAAGCATCATCTGAACAAAAGACCACAACTTCTGATCATATGAAGAAGCATGGATTTGATACTGTAAGGATTGATCATATGGCTCTTTCCTTGTCAAAGACATATAGGTCACCAGTGGTGGACACTATACAATCTCTTCCTCTTTATCAGCAGATTGTACTCTGCTCTTCCATGAAACATTTCCGTGGAACTAAGAAAGAAATAATCCTTGGCGAGTTGTATAAATCTTACGTGGGAATATGCAAATTGTCTCAAATTCAACCGGCTGGGTTCTTGGAATTTTCAGATATGTGCAGAGTGCTAAATGACCAGGGGCTTATTAAACTAGGACAATCACGAGATGATAAATTGAAAAAGGTGACACTAAAAGTAGATGAAGCTGATATTACTTTTGCACTGCAGGGAATCCGTTTTTTTCAAAACTGTATCCAATGA 1803 0.4182 MRPLLAQYVAGNKSKRVLQHSIIKSNFSYHSSHRFDPNFSTMPSITSNSTPHNRILRSHAAVLKPPITSPSKPTLPSRCSNENDVVSIHSGDKKAESDSVYAKPDSDHIVATALDCTPQTHKVRSRAVLEAPTFPSATHSPSKWKSQRRCISASPHTSLIESKVDSVCGADTQAKSGAGKFKWNPNDGEQLRVVKEALHVSTEPSRIACREDEQNTVLEFCKACVEQEKAGSLYICGCPGTGKSLTMERVKGLLLNWATESGFMRPDVLSVNCTSFVNTSDIFTKILELNQPPGKKSSATPLRQLQNTYSQKSSRNNMVLILADELDYLITKDRAVLHDLFMLTTLPFSRCILIGIANAIDLADRFLPRLASLNCKPIVVTFRAYCKDQILRILQERLSELPYIVFQHQALELCARKVAAASGDMRKALCICRSAIEMLEAEIRESTSKSNTSLEEKASSEQKTTTSDHMKKHGFDTVRIDHMALSLSKTYRSPVVDTIQSLPLYQQIVLCSSMKHFRGTKKEIILGELYKSYVGICKLSQIQPAGFLEFSDMCRVLNDQGLIKLGQSRDDKLKKVTLKVDEADITFALQGIRFFQNCIQ 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1234 600 MobiDBLite consensus disorder prediction 447 471 - -
Lal18g1234 600 Gene3D - 187 374 IPR027417 -
Lal18g1234 600 Gene3D - 375 473 - -
Lal18g1234 600 PANTHER CELL DIVISION CONTROL PROTEIN 6-RELATED 76 598 - -
Lal18g1234 600 PIRSF Cdc6 28 600 IPR016314 GO:0006270|GO:0051301
Lal18g1234 600 Pfam AAA lid domain 407 441 IPR041083 -
Lal18g1234 600 SUPERFAMILY "Winged helix" DNA-binding domain 495 598 IPR036390 -
Lal18g1234 600 CDD Cdc6_C 503 585 IPR015163 -
Lal18g1234 600 Pfam CDC6, C terminal winged helix domain 510 588 IPR015163 -
Lal18g1234 600 Pfam AAA domain 228 343 IPR003593 -
Lal18g1234 600 SMART AAA_5 229 376 IPR003593 -
Lal18g1234 600 SMART Cdc6_C_2 510 589 IPR015163 -
Lal18g1234 600 PANTHER CELL DIVISION CONTROL PROTEIN 6 HOMOLOG 76 598 - -
Lal18g1234 600 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 197 446 IPR027417 -
Lal18g1234 600 CDD AAA 213 370 - -
Lal18g1234 600 Gene3D - 495 590 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1234 Lal-Chr18 15066541 15073542 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g1234 140 599 Core DNA Replication Machinery Family AT2G29680 59.660 0.0 555
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g1234 K02213 - gmx:100791200 665.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1234 18 15066541 15073542 Lal18g1234 18 15066541 15073542 ECH