Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1222 ATGGTTGCAGCAGATTCTGTTTCAAGAAAGTGCATGTTGGAGGTCATCAATGAAGTCAAATATGCACTATCTAGCACTGTACAATCAAGTCAGAAACATCTCATCTTGCTACTGATAAGGTTACAAACATTGACCTGGCAACTACTGCTGAAACATAAACTGTTTCAAGAATTGCATCTTCAAATGAAGAAAACACCAAGCCAAAATTTGCATCAGCCCAGCAGAAGAAAACAGGATGCTGATCTCTATGAATGTGGTGTGGACAATCCTAAGACTCATCCTGTCCTGAAATCTTTTAAGTCTGCTGTCAAGAAATGTGTAGCAGTTTTTACATTGTTTCTCTCTGACAGAAGAAAAATAGCCTCAATAGGTATTGGAAGTTATGACAGAAAGGATTTATCAAAAGTCAGAGGGGTATCATCTTTAATTGATTCACCGTCTGAAAGTACCATCAAAAGTTCATCATTACGAAAGCTCTCTTCTTCCTATGCATCAACTAGAAATGCAAGTGAACAGCTTAGAATTGGCAACTTTTCCTTTGAAGAAATTTACAAGTCAACAGCAAAATTCTCTCCAGAAAATATTATTGGGGAAGGTGGATTTGGAACAGTGTATAAGGGAAAGCTTAATGATGGAACTCTTGTGGCTGCGAAGCGTTCTAAGAAGGATGTACTAAACACACGCTTGTCTGAGTTCAAGAATGAAATATACACCTTGTCAAAAATTGAGCATCTGAATCTTGTGAGGTTATATGGATATGTGGAGCATGGAGAGGAGAAGATTGTTGTGGTTGAATATGTTAGTAATGGAACACTTCGAGAACATCTAGATGGTACAAGGGGAGATGGACTAGAAATTGGTGAGCGTCTAGACATAACAATTGATGTAGCACATGCAATCACCTACCTTCATATGTACACAGATAATCCAATTATCCATAGAGACATCAAAGCATCAAACATCCTAATCACACAGAACCTAAGGGCCAAAGTGGCAGACTTTGGTTTTGCAAGGTTGTCTCATGACCCTGGTGCAACCCATATTTCAACTCAAGTTAAAGGAACAGCTGGCTACGTGGATCCCGAGTACCTGAGAACATATCAGCTCACTGACAAGAGTGATGTTTATTCTTTTGGTGTATTGCTTGTTGAAATCATGACAGGAAGACATCCACTAGAATCAAATAGAGCCATCAGTGATAGAGTTACAATCAGATGGGCAATGCGGATGCTGAAAAAAGGGGAACCTGTGATAGCCATGGACCCGAGATTGCGAAGAAGTCCAGCCTCCAACAAGGCAGCGGAGAAGGTTCTCAAGCTAGCTTTCCAATGCCTTGCACCTTCAAAAGAATCAAGGCCATCCATGAAGAGTTGTGCAGAAGTTCTATGGGTCATCCGTAAAGCTTTTAGAGATGTAACCCTTTCACATGATCCTACCCGTCCTTCTCACCATTCTGCATTTTTTCCTCAGAGAAAAGGGCAACAAGGGCTATAA 1494 0.4043 MVAADSVSRKCMLEVINEVKYALSSTVQSSQKHLILLLIRLQTLTWQLLLKHKLFQELHLQMKKTPSQNLHQPSRRKQDADLYECGVDNPKTHPVLKSFKSAVKKCVAVFTLFLSDRRKIASIGIGSYDRKDLSKVRGVSSLIDSPSESTIKSSSLRKLSSSYASTRNASEQLRIGNFSFEEIYKSTAKFSPENIIGEGGFGTVYKGKLNDGTLVAAKRSKKDVLNTRLSEFKNEIYTLSKIEHLNLVRLYGYVEHGEEKIVVVEYVSNGTLREHLDGTRGDGLEIGERLDITIDVAHAITYLHMYTDNPIIHRDIKASNILITQNLRAKVADFGFARLSHDPGATHISTQVKGTAGYVDPEYLRTYQLTDKSDVYSFGVLLVEIMTGRHPLESNRAISDRVTIRWAMRMLKKGEPVIAMDPRLRRSPASNKAAEKVLKLAFQCLAPSKESRPSMKSCAEVLWVIRKAFRDVTLSHDPTRPSHHSAFFPQRKGQQGL 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1222 497 ProSiteProfiles Protein kinase domain profile. 190 464 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal18g1222 497 PANTHER CALMODULIN-BINDING RECEPTOR-LIKE CYTOPLASMIC KINASE 1 82 477 - -
Lal18g1222 497 Pfam Protein tyrosine and serine/threonine kinase 194 462 IPR001245 GO:0004672|GO:0006468
Lal18g1222 497 Gene3D Transferase(Phosphotransferase) domain 1 267 478 - -
Lal18g1222 497 ProSitePatterns Serine/Threonine protein kinases active-site signature. 311 323 IPR008271 GO:0004672|GO:0006468
Lal18g1222 497 CDD STKc_IRAK 196 462 - -
Lal18g1222 497 SMART serkin_6 190 464 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal18g1222 497 MobiDBLite consensus disorder prediction 475 497 - -
Lal18g1222 497 ProSitePatterns Protein kinases ATP-binding region signature. 196 218 IPR017441 GO:0005524
Lal18g1222 497 PANTHER RECEPTOR-LIKE PROTEIN 55 82 477 - -
Lal18g1222 497 SUPERFAMILY Protein kinase-like (PK-like) 171 465 IPR011009 -
Lal18g1222 497 Gene3D Phosphorylase Kinase; domain 1 149 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1222 Lal-Chr18 15020276 15028951 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g1222 178 465 Receptor kinase-like Gene Family AT1G79620 41.237 8.69e-65 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IV Lal18g1222 PK_Tyr_Ser-Thr 8.8e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g1222 - - gmx:100811511 611.298
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1222 18 15020276 15028951 Lal18g1222 18 15020276 15028951 ECH