Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1202 ATGGAAACTTTTGGTGGTAATTCAAACCGATATGCTACCATTTCTTCTAATTCATCATCAGCATCATCTTCTGGAGGTGTTAATAGTAATGATAACAATGCTAATACTAGAAGCAGTGCTGGCATTGTAAACTGGTATGGTGTGAATTTGCCTTCTGTGAGAACTTTGCGTTCTCCACTTTCCTTTTTGTTGGAGCACTCTGGTATCCTAACCTCAGCTCCTGCTTCTGAGGCTGTAATTGTCAACAACAGAATTACGGGTTCGGAGTTACGGTCTCAGCTTCAAACTCAACCACTTGATGGTGGTGGTGCTGATGTTGGACCACCCTGCACGAATAGCTCTGGTGAAGTTGCAATAAGGATCATTGGAGCTGGAGAGAATGATCACAATGTGGTAGGGTCTGGTACTCCTTCATCGTCCTCATGGAATCGGCGTGGAGAAGCTGGTTATGGTGGTTATGATGATCTGATGAGTGGTAGAGATGGAATGCCTGGATTGGTTGATAGAGGTGGTGGTGAGGATCATGGTGGAATTGCCTCTCGCCAGAGGGTTCCTCGGGTGTCTTCGTCTTCATCATTGGCTGGTAGTGGACAAGTTGATGGGAATGGGTTAGAAAGTAACGGCAGGGAGTCGTCAACTTATCAGAGGTATGACATTCAGCAGATAGCAAAGTGGATTGAGCAGATTCTGCCATTTTCACTGTTGCTGTTTGTTGTTTTCATCCGTCAGCATTTGCAAGGTTTCTTTGTCACAATTTGGATATCAGCTGTGATGTTCAAGTCAAATGAAATTGTTAAGAGGCAGACAGCTTTAAAGGGAGATAGGAGAGTATCTATCCTTGCTGGTATCTCAATTGCCTTCATGCTTCATGTGATGTGCATTTACTGGTGGTATCGAAATGATGATCTTTTATACCCGCTGGTCATGATTCCCCCAAATGCAACACCTTTCTGGCATTCAATATTCATCATTTTGGTTAATGATACATTGGTGCGGCAAGCAGCAATGGCTCTCAAGTGTTTTCTGCTTATATATTACAAAAGTGGCAGAGGTCATAACTTCCGTCGGCAGGCTCAAATGTTGACTCTTGTTGAGTATACATTGTTGTTGTATCGTGCCTTGTTGCCAACACCAGTTTGGTACCGGTTTTTCCTGAACAAGGATTATGGCAGTCTCTTTTCGTCACTGACAACTGGGTTGTATTTAACTTTCAAGCTAACATCTTTTATTGAGAAGGTTAAATGCTTTTTTTCTGCCGTGAAAGCATTATCAAGAAAGGATGTTAACTACGGGGTTTGTGCCACAATGGAACAGGTTAATGCTGCTGGTGACCTATGTGCTATATGTCAGGAGAAGATGCATGCCCCCATCTTGTTGCGCTGTAAACACATTTTTTGCGAAGAGTGTGTATCAGAATGGTTTGAGAGAGAAAGAACTTGCCCACTATGTAGAGCATTGGTAAGACCTGCTGATCTGAAAACCTTTGGAGATGGATCTACAAGTCTATTTTTCCAATTGTTTTAA 1524 0.4272 METFGGNSNRYATISSNSSSASSSGGVNSNDNNANTRSSAGIVNWYGVNLPSVRTLRSPLSFLLEHSGILTSAPASEAVIVNNRITGSELRSQLQTQPLDGGGADVGPPCTNSSGEVAIRIIGAGENDHNVVGSGTPSSSSWNRRGEAGYGGYDDLMSGRDGMPGLVDRGGGEDHGGIASRQRVPRVSSSSSLAGSGQVDGNGLESNGRESSTYQRYDIQQIAKWIEQILPFSLLLFVVFIRQHLQGFFVTIWISAVMFKSNEIVKRQTALKGDRRVSILAGISIAFMLHVMCIYWWYRNDDLLYPLVMIPPNATPFWHSIFIILVNDTLVRQAAMALKCFLLIYYKSGRGHNFRRQAQMLTLVEYTLLLYRALLPTPVWYRFFLNKDYGSLFSSLTTGLYLTFKLTSFIEKVKCFFSAVKALSRKDVNYGVCATMEQVNAAGDLCAICQEKMHAPILLRCKHIFCEECVSEWFERERTCPLCRALVRPADLKTFGDGSTSLFFQLF 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1202 507 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 16 507 IPR044235 GO:0061630|GO:1904294
Lal18g1202 507 MobiDBLite consensus disorder prediction 183 210 - -
Lal18g1202 507 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 16 507 - -
Lal18g1202 507 MobiDBLite consensus disorder prediction 128 147 - -
Lal18g1202 507 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 424 493 IPR013083 -
Lal18g1202 507 CDD RING-HC_RNFT1_like 445 484 - -
Lal18g1202 507 MobiDBLite consensus disorder prediction 1 33 - -
Lal18g1202 507 MobiDBLite consensus disorder prediction 153 210 - -
Lal18g1202 507 MobiDBLite consensus disorder prediction 131 145 - -
Lal18g1202 507 SMART ring_2 446 483 IPR001841 -
Lal18g1202 507 ProSiteProfiles Zinc finger RING-type profile. 446 484 IPR001841 -
Lal18g1202 507 ProSitePatterns Zinc finger RING-type signature. 461 470 IPR017907 -
Lal18g1202 507 Pfam Zinc finger, C3HC4 type (RING finger) 444 486 - -
Lal18g1202 507 SUPERFAMILY RING/U-box 437 489 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1202 Lal-Chr18 14875869 14882511 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g1202 50 507 C3H Transcription Factor Family AT5G01960 59.307 0.0 531