Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1191 ATGGCTCATTCGAAAGGTGCACCATCCAAAAAAAATACAGTACAAGCTACCGGTTTTGACCGAATGGGAAGAGGAAAGATCGTGATAAGGAGGATCGACAATTCAACGAGTAGGCAAGTGACGTTCTCGAAGCGAAGGAATGGTTTGCTGAAGAAGGCGAAGGAGCTTGCGATTTTGTGCGATGCTGAGGTTGGAGTTGTCATCTTCTCTAGCACCAGCAAACTCTACGATTTCTCTAGCACCAGCATGAAATCAGTAATTGATCGATACAACAAAACAAAAGGGGAGCATCATCAACTTGGGAGTTCATCCTCAGAAATTAAGTTTTGGAAAAAGGAGGCAGCAATGTTAAGGCAACAATTGCAAAACTTGCAAGAAAGTCACAGGCAAATCATGGGAGAAGAACTGTCTGGTCTGACAGTAAAAGAATTGCAGAATTTAGAGAACCAATTGGAAATCAGCATTCATGGTGTACGTATGAAAAAGGACAAAATCTTAATGGATGAAATACAGGAGTTAAATAGAAAGGGAAAACTCATACTCCAAGAAAATGTGGAACTGAAAAATAAGGTTTATGGAACAAGAGATGGGGATGGAACAAACAGGAAATCTGTTCTCAGAAATGATCTACACACAGGAGATGAATTGAATGTCACTGTGAATCTGCATCTATAA 675 0.4015 MAHSKGAPSKKNTVQATGFDRMGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVVIFSSTSKLYDFSSTSMKSVIDRYNKTKGEHHQLGSSSSEIKFWKKEAAMLRQQLQNLQESHRQIMGEELSGLTVKELQNLENQLEISIHGVRMKKDKILMDEIQELNRKGKLILQENVELKNKVYGTRDGDGTNRKSVLRNDLHTGDELNVTVNLHL 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1191 224 ProSitePatterns MADS-box domain signature. 24 78 IPR002100 GO:0003677|GO:0046983
Lal18g1191 224 Coils Coil 170 190 - -
Lal18g1191 224 PANTHER MADS-BOX TRANSCRIPTION FACTOR 23 ISOFORM X1 22 223 - -
Lal18g1191 224 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 31 78 IPR002100 GO:0003677|GO:0046983
Lal18g1191 224 ProSiteProfiles K-box domain profile. 107 197 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lal18g1191 224 Pfam K-box region 104 191 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lal18g1191 224 SMART madsneu2 22 81 IPR002100 GO:0003677|GO:0046983
Lal18g1191 224 PANTHER SERUM RESPONSE FACTOR HOMOLOG 22 223 - -
Lal18g1191 224 SUPERFAMILY SRF-like 23 112 IPR036879 GO:0003677|GO:0046983
Lal18g1191 224 CDD MADS_MEF2_like 23 99 IPR033896 GO:0000977|GO:0045944
Lal18g1191 224 Coils Coil 107 134 - -
Lal18g1191 224 ProSiteProfiles MADS-box domain profile. 22 82 IPR002100 GO:0003677|GO:0046983
Lal18g1191 224 PRINTS MADS domain signature 24 44 IPR002100 GO:0003677|GO:0046983
Lal18g1191 224 PRINTS MADS domain signature 44 59 IPR002100 GO:0003677|GO:0046983
Lal18g1191 224 PRINTS MADS domain signature 59 80 IPR002100 GO:0003677|GO:0046983
Lal18g1191 224 Gene3D - 34 116 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1191 Lal-Chr18 14786903 14799429 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g1191 22 209 MADS-box Gene Family AT4G37940 63.830 7.32e-83 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lal18g1191 K-box 2.2e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g1191 K09264 - gmx:100778970 318.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1191 18 14786903 14799429 Lal18g1191 18 14786903 14799429 ECH