Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1183 ATGGTTGGTGCACCTTCTTTCAAGCCATTATTCTTCATCACCATCATTCTCATTCTTCCTACCATCATTGCAAAGACCAATGATGATGATAATGGTGGTATTGCAACCACAGCACCTACGGTATCAACGCATTTTGATCATGACCATCAAGGAAAGAAATCATCAGAGCCATTGAAACCAAGCACAGCAGTTGTTGTTTGTGTTTTGACAACTGTTTGTTCCATTACGTTTATGATTCTTCTCTATATCAAACATTGCATTGATGTTAACAATGCATCTTCTAGTTTCAGCAACCCTAATAATAATTCTTCTGATGAAAGAAAGAACTCTGGTGTTGAACGTTCAGTGGTTGAATCATTACCCATTTTCAGATTCGGTTCTCTCACGGGTCACAAGGAAGGATTGGAATGTGTTATTTGTCTCAAGAGGCTCGAGGATCACGAGTTTCTTCGACTTCTACCAAAATGCAACCATGCATTTCACGTTGAATGTGTTGACATGTGGCTCAACGCTCATTCAACTTGTCCTCTTTGTAGGGACAAAGTTGACCTAGAAGATGTTGATATTCTCCTTGACCAACAATACCTTCCATCACCGTCATTGATACATAACCAAAGCAATAATCATAACGAAGATCTTGATATTAACAACACAGTGCAACCGCAGAATCTGAATCATGGAATATCTCAGAGGCATTCATGGGTGGGAGAGAGCGACGATGGATTTATAGAAATAAATTTAGAGCAGAAGGAAGAGACAACATCGTCAAAACGAAGATCATTAGATGATAGTGCAATGAGAAGAATAAAGGGTAATAGAGAAGATATAATATTAGTTACACAAGGAAACGAGAGAGAAAAGAAAAAAGAAGAGGAACACAGATTAGAGCACCGTATAGTTATATCTAATACTACAAAATCATCACCATGTGGTAGTAGTATCCAGCAAAAACGGTGGAGCAATGTTGAACAGTGTGATTTGTTGTACTTAACTTCCGATATGATAATGAGTGAAACTAGTGCAAAAGCAACATCATCATCTCAGAGGCAGCAACATCAAAATAAGAGGATGACATTACCATGGAAAATACATGGAGGAGGAAGCTTGCGAAACCAGAATGTTGAAGATGATATGGAGAAAGGTGGGGCGAATATGAATATGAGGAGTGTGTCTGAGACGACGGGGATGAATAGGAATAGAGGGAGGGGGAGGGAAGGAGAGGAAGAGCGACACGAGGGCGTGGTTAAGAGGTGGTTGGCTTGGATTTCCAAAACACGCTCGCCATAA 1287 0.4002 MVGAPSFKPLFFITIILILPTIIAKTNDDDNGGIATTAPTVSTHFDHDHQGKKSSEPLKPSTAVVVCVLTTVCSITFMILLYIKHCIDVNNASSSFSNPNNNSSDERKNSGVERSVVESLPIFRFGSLTGHKEGLECVICLKRLEDHEFLRLLPKCNHAFHVECVDMWLNAHSTCPLCRDKVDLEDVDILLDQQYLPSPSLIHNQSNNHNEDLDINNTVQPQNLNHGISQRHSWVGESDDGFIEINLEQKEETTSSKRRSLDDSAMRRIKGNREDIILVTQGNEREKKKEEEHRLEHRIVISNTTKSSPCGSSIQQKRWSNVEQCDLLYLTSDMIMSETSAKATSSSQRQQHQNKRMTLPWKIHGGGSLRNQNVEDDMEKGGANMNMRSVSETTGMNRNRGRGREGEEERHEGVVKRWLAWISKTRSP 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1183 428 SUPERFAMILY RING/U-box 131 184 - -
Lal18g1183 428 MobiDBLite consensus disorder prediction 379 413 - -
Lal18g1183 428 MobiDBLite consensus disorder prediction 398 413 - -
Lal18g1183 428 ProSiteProfiles Zinc finger RING-type profile. 137 179 IPR001841 -
Lal18g1183 428 PANTHER RING-H2 FINGER PROTEIN ATL43 38 425 - -
Lal18g1183 428 Pfam Ring finger domain 136 179 IPR001841 -
Lal18g1183 428 CDD RING-H2_EL5_like 136 179 - -
Lal18g1183 428 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 111 188 IPR013083 -
Lal18g1183 428 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 38 425 - -
Lal18g1183 428 SMART ring_2 137 178 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1183 Lal-Chr18 14717500 14718786 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g1183 58 421 C3H Transcription Factor Family AT5G05810 37.789 3.42e-64 210