Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1182 ATGAACGATAGGAGATCAAAGTCTGAAAGGAAATCAATGGAAGCATGCAAGAGTCACAGGGACGCTGAGAGGAGACGCAGACAGCGAATCAACGACCACCTCACTACCTTACGTTCTCTCCTTCCCAACACCGTCAAGTCTGATAAGGCTTCGTTACTAGCGGAAGTGGTTCAATACGTGAAGCGGTTGAGGAAACAGGCTGATGACGTGGCACACAGTGAACCCGGTTCGGTGGACGCTGAGGCGTGGCAGTTTCCGGGGGTGTACGATGAGGCTACGGTGAGTTGTTGCGACGGAGAACCAAAGCTGATGAAGATAACGATGTGCTGCGAGGACCGGCCCGAGTTGAACCGGGATTTGACTCGGGCGATTCGGACGGTTCGGGCAAAAGCGGTTCATGCTGAGATGATGACGATTGGTGGCCGGACCAAGAATGTTGTGGTGATTCAATGGGAAGGGAAGGAGGAGAATGAGGCTGGGGCTTTAGAACGGGCTTTGAAGGCGGTCATAGAGAATCGGGCTTTGGTGGATCCTTCGATGGGCCGGGTTGTGGTGGGTCAGAAACGGACTCGGGATAGTTATAGTTGGCCTCTCGAAGTTGACTATGCGTTTTTATTGGGGACCACACTAAGTAGGGGTGAGCATAACCTAACTCATTCCAAAAACCTTTTTCTATCGGAAGAAATTGGTTCAGGTCGGATTTGA 705 0.5163 MNDRRSKSERKSMEACKSHRDAERRRRQRINDHLTTLRSLLPNTVKSDKASLLAEVVQYVKRLRKQADDVAHSEPGSVDAEAWQFPGVYDEATVSCCDGEPKLMKITMCCEDRPELNRDLTRAIRTVRAKAVHAEMMTIGGRTKNVVVIQWEGKEENEAGALERALKAVIENRALVDPSMGRVVVGQKRTRDSYSWPLEVDYAFLLGTTLSRGEHNLTHSKNLFLSEEIGSGRI 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1182 234 SMART finulus 20 69 IPR011598 GO:0046983
Lal18g1182 234 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 14 63 IPR011598 GO:0046983
Lal18g1182 234 CDD ACT_UUR-ACR-like 106 170 - -
Lal18g1182 234 PANTHER TRANSCRIPTION FACTOR BHLH30 3 192 IPR045847 GO:0003700|GO:0006355
Lal18g1182 234 PANTHER OS09G0463900 PROTEIN 3 192 - -
Lal18g1182 234 Gene3D - 7 73 IPR036638 GO:0046983
Lal18g1182 234 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 18 70 IPR036638 GO:0046983
Lal18g1182 234 MobiDBLite consensus disorder prediction 1 28 - -
Lal18g1182 234 Pfam Helix-loop-helix DNA-binding domain 16 63 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1182 Lal-Chr18 14708818 14709997 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g1182 11 171 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 43.605 2.44e-31 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal18g1182 HLH 5.3e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g1182 - - aip:107608273 275.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1182 18 14708818 14709997 Lal18g1182 18 14708818 14709997 ECH
Lal18g1182 18 14708818 14709997 Lal6g0442 6 2789861 2791525 LSH