Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1179 ATGTTCTCGAACCTTCTCCAACGACAATACCAATCTCAATCTCACCCTTCCCTTCTTTCCACAGAGTACCAAACTTCCGAAGAAGATGACAGCCCCACCCAAAAGCCCGCCTCCGCCACTGGAGATGCCGGTACTATTGAAGCCGTGCGAAAGCCCAGAGGCCGCCCACCGGGCTCTAAAAATAAACCCAAGCCACCTGTCATAATAACTCAAGAGCCCGAGCCCGTTATGAGACCGTATATTCTAGAAGTATCTGGTGGAAGCGACGTCGTTGAAGCCTTAAAACGTTTCACCATCCGTAAGAACACGGGCTTATGCGTTCTCTCGGGTAAAGGAACAGTTGCTAACGTCACTTTCCGTCAACCTTCTTCTCTCGCTCAAGGCACCGCCGTTACTTTTTACGGTCACTTTGATATTTTATCTCTTTCCGCCACTATTTCCCCAAACTCTTCGATTCCAGTCCCTAACGACATCTCTATCTCCATCGCCGGACCTCAGGGCCAGGTCGTCGGAGGATTCGTCGCCGGAAGTTTAATCGCCGCCGGGACGGTGTTCCTGATTGCATTATCTTTCAACAATCTGTCTTATCACAGGCTGCCATCGGAAGAGGACGTGAGAAACAACAACTCAATTTCTGGCGGCGGTGATGTGCAGTCGCCGCCGGTATCAGGCGGCGCTGAAAGCGGCCACGTGAATGATGAGTCTATGTATAGCTGTCAGTTACCCTCTGATGTGAATTGGGCTCCAACGGCAAGACCACCACCACCACCACCACCACCTTTCTGA 786 0.5153 MFSNLLQRQYQSQSHPSLLSTEYQTSEEDDSPTQKPASATGDAGTIEAVRKPRGRPPGSKNKPKPPVIITQEPEPVMRPYILEVSGGSDVVEALKRFTIRKNTGLCVLSGKGTVANVTFRQPSSLAQGTAVTFYGHFDILSLSATISPNSSIPVPNDISISIAGPQGQVVGGFVAGSLIAAGTVFLIALSFNNLSYHRLPSEEDVRNNNSISGGGDVQSPPVSGGAESGHVNDESMYSCQLPSDVNWAPTARPPPPPPPPF 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1179 261 MobiDBLite consensus disorder prediction 1 40 - -
Lal18g1179 261 MobiDBLite consensus disorder prediction 1 72 - -
Lal18g1179 261 SUPERFAMILY AF0104/ALDC/Ptd012-like 76 203 - -
Lal18g1179 261 Pfam Plants and Prokaryotes Conserved (PCC) domain 78 193 IPR005175 -
Lal18g1179 261 Gene3D - 78 211 - -
Lal18g1179 261 ProSiteProfiles PPC domain profile profile. 74 212 IPR005175 -
Lal18g1179 261 CDD DUF296 78 191 IPR005175 -
Lal18g1179 261 MobiDBLite consensus disorder prediction 205 261 - -
Lal18g1179 261 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 17-RELATED 17 258 - -
Lal18g1179 261 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 17 258 IPR014476 GO:0003680
Lal18g1179 261 PIRSF ESCAROLA 1 252 IPR014476 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1179 Lal-Chr18 14685799 14686584 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g1179 40 256 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 58.442 1.67e-84 252
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g1179 - - gmx:100811053 303.523
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1179 18 14685799 14686584 Lal18g1179 18 14685799 14686584 ECH
Lal18g1179 18 14685799 14686584 Lal22g0417 22 2703584 2704411 LSH
Lal18g1179 18 14685799 14686584 Lal6g0444 6 2802198 2803052 LSH
Lal18g1179 18 14685799 14686584 Lal21g0618 21 4644210 4646551 PCT