Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1153 ATGGCTTACCCACATTATCGATCACAGTTTGGAGACACAACATTCACCAAAGTTTTTGTTGGAGGGCTAGCTTGGGAGACCCCAACTGAAGAAATGCGCAAATACTTTGAGCAGTTTGGAGAAATTCTTGAAGCCGTTATTATCACTGATAAAAACACAGGAAACTCTAAAGGCTATGGATTTGTAACATTCCGTGACGCAGAATCAGCTAGAAGGGCTTGTTCTGATCCAAACCCAGTAATAGATGGAAGAAGAGCAAATTGTAACATTGCTTCTCTAGGAAGGCCTAGTTCATCATCGCCTAGAGGAAGTGGTACATTTCAAGGTGGAGTGACAGGGACCGTACATGGTGCAGGATCCAATAGTGGTGTTCCGGCAACAGGACCACTAACACTGACACCACCACTACTGTACCCACAACCATATGGGTAA 432 0.4444 MAYPHYRSQFGDTTFTKVFVGGLAWETPTEEMRKYFEQFGEILEAVIITDKNTGNSKGYGFVTFRDAESARRACSDPNPVIDGRRANCNIASLGRPSSSSPRGSGTFQGGVTGTVHGAGSNSGVPATGPLTLTPPLLYPQPYG 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1153 143 SMART rrm1_1 17 89 IPR000504 GO:0003723
Lal18g1153 143 MobiDBLite consensus disorder prediction 91 143 - -
Lal18g1153 143 Gene3D - 3 112 IPR012677 -
Lal18g1153 143 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 93 IPR000504 GO:0003723
Lal18g1153 143 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 75 IPR000504 GO:0003723
Lal18g1153 143 PANTHER BOULE-RELATED 1 143 IPR037366 GO:0003729
Lal18g1153 143 SUPERFAMILY RNA-binding domain, RBD 9 113 IPR035979 GO:0003676
Lal18g1153 143 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 143 - -
Lal18g1153 143 MobiDBLite consensus disorder prediction 91 128 - -
Lal18g1153 143 CDD RRM_RBM24_RBM38_like 16 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1153 Lal-Chr18 14432501 14437541 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g1153 12 92 C2H2 Transcription Factor Family AT2G19380 40.741 2.68e-16 72.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1153 18 14432501 14437541 Lal18g1153 18 14432501 14437541 ECH
Lal18g1153 18 14432501 14437541 Lal22g0442 22 2867991 2874324 LSH
Lal18g1153 18 14432501 14437541 Lal6g0469 6 2981369 2985982 LSH