Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1112 ATGGATACTGAGGACGAAAATATCAATGCCGAAAATACAGAGCATGCTGATAGGGGTCGGTGTTTGGAAATGGATAGTGTAAATAATGGGGTGGTACTTGAAGAAGGGAATGAGATTCATTGCTTGAAGAATGAAGCTGTGGATAATGTGGTGGGAATTGAAGATGGGAATGAGGTTCATTGCTTGAAGAATGAAACTGTAAATAATGGAGTGGCAATTGCTGATGGGAATGGTGTTGCTGAAGGGAAAGAGGTCCTGTGTTTGAAGAATGAAACTGTAAATAATGGAGTAGTGATTGCTGATGGGAAAAGTGTTGCTAAGGGGAAAGAGGTTCGGTACTTGAAGAGGCGAACTGTTAGTAATGGAGTGGAAATTACTAATGGGAAAGGTATCATTGAGGGGGACTCTGCTGGAGTTGAATGTTTGCGAACTTATAAGAGGCGTAAGCATGTAAAATCGAGTTCAGAAAGCAAGGTTCAGGAAGTCAGCAAAGGATGTGTGGAAGCTGCAAGTCGCCTATCAGACCAGGCTGTGAAGAAACCATATGATTTAGCTGTAGGCAATACTTCAAATGATTTTTCACATGCACGTTGGGGAGAAGTTGTGCTAAACCATTTATATCATTCCATAGGTGGTAACAATGGCAGCATAGAGGGGTCCGTAAGGGAAGCACTCATGAAATATCCCAAATTTAGTTGTGCCCCTACAGTTACGGAAACTTTTAAAAATGACAAAGATGGTCAAGAATGCTCTTCCGAATCTGAGCTGTTGTCTCACGGATTACAGAATGAAACTAATGGACATGCAATTATAATGCATAATGGATGCTCTAGTAAATCAGATGCTCGTGGTGGTACTGAGAGGTGTCAACGTGTGTTATGTAATATCTTAACTTCTGAAAAATTCAGCTCATTGCGTAAGGTGCTACTTGAAAATTTCCAAGGAATCAAACTTGAAAGTGTATTTGACTTCAATGTCATAAACACGAGGATGAAAGAACAAGCTTATGAAAACTCACCTGCACTTTTCTTGTCAGATATTGAACAGGTTTGGAGAAAGCTTCAAGATGCTGGAAATGAGATTGTTGCTATTACCAAAAGCCTCTCCAACATGTCAAAAGCTTCCTACTGTGAGAAGGTTGGAGTTCCAGCAAACTGCTCATTTGAAAATGAAAAGGAAGTGTTGTATAATTGGGAATCCAACTCTCAAATGAAACCAGAGCAGACAGAAGAATGTGCTACATATAAGACTTGCACATGCAGGCATTGTGGAAAGATGGCAGATGGGACGGATTGTTTGGTTTGTGATTCATGCGAGGAGATGTACCACGTGCCCTGTATTGAGCCTGCTGTGAAAGAAATACCCCAAAAAAGCTGGTTCTGTGCCAATTGTTCTTGTAAAGAAATTGGATCTCCACATGAGAAGTGTGTGGTGTGTGAAAGGTTGAACGTCCCGGAGACCCTGAACAACGTTGTTGGTAAGGAAAACATCCCGACAGATGAGGAAACACTGAAAGAGGTGGAAGAGAATTCAAATGGTACTCATGATGATGGAATTCAAGTGTCCGTAGGTGGGAGAAACTTACCTGACTGCAAAGTTTGTCGAGAAGAGGTAGATGGTCAAAGATTGAAGATATGTGGTCACCCTTTTTGCCCCAGTAAATACTACCATGTAAGGTGTTTGTCAAGTAAACAGATGAAGTTGTATGCTCAATGTTGGTACTGCCCTTCTTGTTTATGCCGAGTTTGCCTCACTGATCAAGATGATGATAAGATCGTTCTCTGTGATAGCTGTGATCACGCATACCACATCTATTGCATGAAACCTCCACGAACTTCTGTTCCAAAAGGGAAATGGTTCTGCAGAAAATGCGATGCAGGGATCCAAGCAATACGCCGAGCAAAAAAGGCATATGAGGGTAAGAAGTATAAAACGGATGAAAATGTTTCGAAGCCAAATGATAAGATATGGTGCAATAAACGAGGACGGGAAGTAGACAAAGTTGGAGGAATGGACATGCTTTTAACTGCAGCCAATACTTTGAATTTTGAAGAGAACTTAACTGAAAACCAGACTCAATCAAAGAGATCTTGA 2094 0.4112 MDTEDENINAENTEHADRGRCLEMDSVNNGVVLEEGNEIHCLKNEAVDNVVGIEDGNEVHCLKNETVNNGVAIADGNGVAEGKEVLCLKNETVNNGVVIADGKSVAKGKEVRYLKRRTVSNGVEITNGKGIIEGDSAGVECLRTYKRRKHVKSSSESKVQEVSKGCVEAASRLSDQAVKKPYDLAVGNTSNDFSHARWGEVVLNHLYHSIGGNNGSIEGSVREALMKYPKFSCAPTVTETFKNDKDGQECSSESELLSHGLQNETNGHAIIMHNGCSSKSDARGGTERCQRVLCNILTSEKFSSLRKVLLENFQGIKLESVFDFNVINTRMKEQAYENSPALFLSDIEQVWRKLQDAGNEIVAITKSLSNMSKASYCEKVGVPANCSFENEKEVLYNWESNSQMKPEQTEECATYKTCTCRHCGKMADGTDCLVCDSCEEMYHVPCIEPAVKEIPQKSWFCANCSCKEIGSPHEKCVVCERLNVPETLNNVVGKENIPTDEETLKEVEENSNGTHDDGIQVSVGGRNLPDCKVCREEVDGQRLKICGHPFCPSKYYHVRCLSSKQMKLYAQCWYCPSCLCRVCLTDQDDDKIVLCDSCDHAYHIYCMKPPRTSVPKGKWFCRKCDAGIQAIRRAKKAYEGKKYKTDENVSKPNDKIWCNKRGREVDKVGGMDMLLTAANTLNFEENLTENQTQSKRS 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1112 697 PANTHER D4, ISOFORM A 181 685 - -
Lal18g1112 697 ProSiteProfiles Zinc finger PHD-type profile. 417 467 IPR019787 -
Lal18g1112 697 SUPERFAMILY FYVE/PHD zinc finger 402 465 IPR011011 -
Lal18g1112 697 Pfam PHD-finger 580 625 IPR019787 -
Lal18g1112 697 Pfam PHD-finger 420 467 IPR019787 -
Lal18g1112 697 SUPERFAMILY FYVE/PHD zinc finger 579 631 IPR011011 -
Lal18g1112 697 ProSiteProfiles Zinc finger PHD-type profile. 577 627 IPR019787 -
Lal18g1112 697 ProSiteProfiles Zinc finger RING-type profile. 531 578 IPR001841 -
Lal18g1112 697 SMART PHD_3 530 579 IPR001965 -
Lal18g1112 697 SMART PHD_3 419 465 IPR001965 -
Lal18g1112 697 SMART PHD_3 580 625 IPR001965 -
Lal18g1112 697 PANTHER HISTONE ACETYLTRANSFERASE 181 685 - -
Lal18g1112 697 Gene3D - 311 467 - -
Lal18g1112 697 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 527 630 IPR013083 -
Lal18g1112 697 SUPERFAMILY FYVE/PHD zinc finger 527 579 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1112 Lal-Chr18 14100250 14106102 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g1112 579 642 C2H2 Transcription Factor Family AT3G01460 45.312 1.38e-13 72.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lal18g1112 PHD 4.9e-13 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g1112 - - lang:109337790 1244.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1112 18 14100250 14106102 Lal18g1112 18 14100250 14106102 ECH