Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1106 ATGCAGAAGGTTCTTCCACCTCATGCAGAAATCACCAACAAAGCCACTGAGACAATTCAAAAGTGTGTGTATAGGTTCATAACTACTGTCACAAGTGAGGCCAATAAGAAGTGCAAGAGCAAGAAGAGAAAGATTGTTGCTGCAAGGGATTTGCTATCTGCTATGGAAGGGTTAGGGTTAAATAACTATGTGGAGCCTCTCCTTGCTTACCATGATAGTTACCTTGAGAATGAAGTTAAACACTTAATAATGGGTGGTAATAATAATGGTAAGAGAGTTGAAAATGATGTGATGGGTCTAACACCACAACTTCAAGAGTCTAGTGGTGGCTCTAATAGTATCCCACTCACTCCAATCTTTAACCCACCAACAAGTGTTAGTAGCTCAGCTAGTTGCAATGCTATGGAGAACTTTGATCTATTGCCTTTCCTAGATCCTTGA 441 0.4036 MQKVLPPHAEITNKATETIQKCVYRFITTVTSEANKKCKSKKRKIVAARDLLSAMEGLGLNNYVEPLLAYHDSYLENEVKHLIMGGNNNGKRVENDVMGLTPQLQESSGGSNSIPLTPIFNPPTSVSSSASCNAMENFDLLPFLDP 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1106 146 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 92 IPR027113 GO:0001228|GO:0006355|GO:0016602
Lal18g1106 146 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 1 92 - -
Lal18g1106 146 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 1 55 IPR003958 -
Lal18g1106 146 SUPERFAMILY Histone-fold 1 81 IPR009072 GO:0046982
Lal18g1106 146 Gene3D Histone, subunit A 1 109 IPR009072 GO:0046982
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g1106 1 79 CCAAT-HAP3 Transcription Factor Family AT1G21970 48.101 1.94e-22 87.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Lal18g1106 CBFD_NFYB_HMF 1.3e-12 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g1106 K08065 - gmx:100800011 90.5077