Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1098 ATGACAAGTTACCCTGATACGGTGGTGGATCACCGGAGCTCCGGCAAGGCACCGGGAAAGTCTAACTTTTCACAAACTTGTACCCTATTGAGTCATTTCTTGAAGGAAAAACGCAGTTCTGGTGCTTCTACCCTTGGAATTGGTGGGAATAATGAGCATAAAGGAAATACAAAGGATTTGATATCTAACCTGCAAAATTCAGATGGGGCTTTGAGACTTAATGCTTCAGCTTTGGATTTCCTTCCCCAGTTTGTGGAAAATCCTTGCATTAAGAAGTCTAATGATAGGACAACAGGACCTGAAACTCCACAATTGACAATATTATATGCTGGAAAAATGTTAGTATTTGATGCTTTTCCACCAGAAAAGGCCACAGAAATAATGGAATTAGCTACAAAGTTAGCTTCTGATAATTCCAGCATCAAAGAAATTCCACCAAGTGTTCTTATTACTACTGAAAAATTAAAAGGGTCAAAGGTGCCTCAGACAAACACTGATTCTGAGAATCCTCGACCAGGAAACCAAGTTGTTGGTCCAGATATGAGGTATCCAAGGAGAGCTTCACTTGTAAAATTTCTAGAGAAAAGGAAAGAAAGGGTCATTGCTAAAGGGCCTTACCAAATTAACAACCCCAATCCCACTAGGCAAGAAGGAAGCAGTTCAGGGTGTGAACCTGAAGATCAATGTTCCAAACAGTTAGACCTTAATTTGTAG 714 0.402 MTSYPDTVVDHRSSGKAPGKSNFSQTCTLLSHFLKEKRSSGASTLGIGGNNEHKGNTKDLISNLQNSDGALRLNASALDFLPQFVENPCIKKSNDRTTGPETPQLTILYAGKMLVFDAFPPEKATEIMELATKLASDNSSIKEIPPSVLITTEKLKGSKVPQTNTDSENPRPGNQVVGPDMRYPRRASLVKFLEKRKERVIAKGPYQINNPNPTRQEGSSSGCEPEDQCSKQLDLNL 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1098 237 MobiDBLite consensus disorder prediction 152 180 - -
Lal18g1098 237 SMART tify_2 98 133 IPR010399 -
Lal18g1098 237 MobiDBLite consensus disorder prediction 156 172 - -
Lal18g1098 237 PANTHER JASMONATE ZIM-DOMAIN PROTEIN 9 231 - -
Lal18g1098 237 ProSiteProfiles Tify domain profile. 98 133 IPR010399 -
Lal18g1098 237 Pfam Jas motif 185 207 IPR018467 -
Lal18g1098 237 MobiDBLite consensus disorder prediction 1 22 - -
Lal18g1098 237 MobiDBLite consensus disorder prediction 207 237 - -
Lal18g1098 237 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 9 231 IPR040390 -
Lal18g1098 237 Pfam tify domain 100 131 IPR010399 -
Lal18g1098 237 MobiDBLite consensus disorder prediction 201 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1098 Lal-Chr18 14019601 14022526 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g1098 8 211 Tify Gene Family AT1G19180 30.417 1.43e-19 82.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Lal18g1098 tify 5.1e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g1098 K13464 - gmx:100778559 341.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0564 6 3628636 3630836 Lal18g1098 18 14019601 14022526 LSH
Lal22g0508 22 3373319 3376131 Lal18g1098 18 14019601 14022526 LSH