Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1087 ATGGCCGCCACCGCTAACGCCACCTCAGCACCGCGCCAGTTGTCGCAGAAGGAACTCGACATTCAGTTGATGTTGGCGGCGGAAGTGCATCTCGGCACCAAAAACTGCGACTTCCAAATGGAACGTTACATCTTCAAGCGTCGTTTCGATGGAATTTACATTATTAATTTGGGAAAGACATGGGAGAAGCTTCAACTTGCTGCCAGGGTTATTGTTGGGATTGAGAACCCTCAGGACATCATTGTCCAGTCTGCCAGGCCTTATGGTCAGAGAGCTGTTCTTAAGTTTGCTCAGTACACTGGTGCTCATGCAATTGCTGGAAGGCACACTCCTGGAACATTCACCAATCAGCTCCAGACTTCATTCAGCGAGCCACGCCTTCTCATTCTTACCGATCCAAGGACAGATCACCAGCCCATCAAGGAAGGTGCCCTTGGAAATATTCCAACAATTGCTTTTTGTGACACCGATTCTCCTATGAGGTATGTTGACATTGGAATTCCTGCCAACAATAAGGGAAAGCATAGCATTGGTTGTCTATTTTGGCTTCTTGCAAGGATGGTATTACAAATGCGTGGTACTATTCGCCCTGGGCTTAAGTGGGATGTGATGGTGGATTTGTTCTTCTATAGAGAACCTGAGGAGGCTAAACAACTAGAAGAAGATGAAGCTCCAGCAGTAGATTATGCTGCCATCACAGACTTCAATGCAAGCTCTCTTGCTGCTGATGGCCAGTGGCCCACTGCAATTGATCAGTCTTGGACTGATGCAGTTCCACAACCTATTCCAGCAGTTCCTGGTGTTGGCTGGGTGGCCCCAGAAACTGTTCCAGTTGCAGGAGACTGGGGTGAAGCTGTTCCACCACCACAAATTCCCGCTCCAGTAATCGACTCTATTCCAGCATCTGGCTGGGAATAG 918 0.4858 MAATANATSAPRQLSQKELDIQLMLAAEVHLGTKNCDFQMERYIFKRRFDGIYIINLGKTWEKLQLAARVIVGIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGLKWDVMVDLFFYREPEEAKQLEEDEAPAVDYAAITDFNASSLAADGQWPTAIDQSWTDAVPQPIPAVPGVGWVAPETVPVAGDWGEAVPPPQIPAPVIDSIPASGWE 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1087 305 PANTHER 40S RIBOSOMAL PROTEIN SA 9 304 IPR005707 GO:0003735|GO:0006412|GO:0015935
Lal18g1087 305 CDD RPS2 24 190 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lal18g1087 305 PRINTS Ribosomal protein S2 signature 21 39 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lal18g1087 305 PRINTS Ribosomal protein S2 signature 51 60 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lal18g1087 305 PRINTS Ribosomal protein S2 signature 100 117 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lal18g1087 305 PRINTS Ribosomal protein S2 signature 125 142 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lal18g1087 305 PRINTS Ribosomal protein S2 signature 142 153 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lal18g1087 305 PRINTS Ribosomal protein S2 signature 163 177 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lal18g1087 305 PANTHER 40S RIBOSOMAL PROTEIN SA 9 304 - -
Lal18g1087 305 ProSitePatterns Ribosomal protein S2 signature 2. 125 149 IPR018130 GO:0003735|GO:0005840|GO:0006412
Lal18g1087 305 TIGRFAM uS2_euk_arch: ribosomal protein uS2 17 212 IPR005707 GO:0003735|GO:0006412|GO:0015935
Lal18g1087 305 ProSitePatterns Ribosomal protein S2 signature 1. 21 32 IPR018130 GO:0003735|GO:0005840|GO:0006412
Lal18g1087 305 Gene3D - 20 226 - -
Lal18g1087 305 SUPERFAMILY Ribosomal protein S2 16 206 IPR023591 -
Lal18g1087 305 Pfam Ribosomal protein S2 24 118 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lal18g1087 305 Pfam Ribosomal protein S2 123 188 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lal18g1087 305 Hamap 40S ribosomal protein SA [rps-0]. 8 249 IPR027498 GO:0003735|GO:0006412|GO:0015935
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1087 Lal-Chr18 13914636 13917046 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g1087 1 305 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 71.104 1.07e-152 427
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g1087 K02998 - gmx:548014 531.946