Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1085 ATGTGTGGAGGAGCTATTATCTCCGATTTCATTCCGGCTGACGGCGCGGCGTTGGGGAGGCCCCGGCGAGTGACCGCCGACATACTGTGGCCAAATTTGAGGAAGAAGACAGGGAAGAAGTTCTCGAAGCTTCTAAGGCCTAAGACGGTGGTGTTAAACGATGATTTCGAAGATGATTTTCGAAATTTCAAGGATGATTCTGATATTGAAGAGGACGATGATGATGACTACATGGAAGGTGGTTTTGAACCAACTAAGCCCTCTAATCAGAATCTTAAGACCCTTTCTCGTGGATCTACATCTGTGAAATCTGTGAAATTGAATGGGCAAGCTGAGGAGTCTTCGAAGAGGAAGAAGAAGAATCAGTATAGGGGAATCCGTCAGCGTCCATGGGGGAAATGGGCAGCTGAGATTCGGGACCCAAGTAAGGGTGTCCGTGTTTGGCTTGGAACCTTCAACACTGCTGAAGAAGCTGCAAGAGCTTATGATGTTGAAGCGAGGAGGATCCGTGGTAAGAAAGCCAAGGTGAATTTCCCTGATGAGGCTCCAGCTGCGACCCCAAAACGTCTTAAGGTAAGTCCAGAGGAGCCGAAGGAAAATCTCAACTTTGTTCAACCCAAAGTAAACAAGATGATCAATCTGGAGGACTACTCTATGGGTCATGTGGAACAGAAACCACCGATTAACCAGTATTCTAACATAAGCCCCTTCACTGGGAATGGACTTGATCTCACTCCCCTTGATGCATCTGATAATGTTACGGCTTATTTCAGTTCCGAGCACTCAAGTAACTCATTTGACTATTCTGATCTTGGATGGGGCGAACAAGGCCGGAAGACTCCCGATATCTCATCCATGTTTTATGCTCCTATGGAAGGGCAATCTGAGTTTGTTCAGGTTGCTAATCAGCAGAAAAACCTGCAGCCTAACTCTGAGAATGTTGTATCCGTGGATGACGATCCCGCAAAGTCAGTAACCGAGGAGCTCTTATATATGGAATCCCACCTGAAGTTCTTTGATCAAACCCCTTATCTAAGTGAGAGCTGGGATGATTCTTCATTGGCATCCTTCCTTGGAAGTCAGGATAGTGGAAATTCAATGAACCTTTGGAGTTTTGATGACATGTCTTCAGTGGCTGGTGGAGTTTTCTGA 1152 0.4618 MCGGAIISDFIPADGAALGRPRRVTADILWPNLRKKTGKKFSKLLRPKTVVLNDDFEDDFRNFKDDSDIEEDDDDDYMEGGFEPTKPSNQNLKTLSRGSTSVKSVKLNGQAEESSKRKKKNQYRGIRQRPWGKWAAEIRDPSKGVRVWLGTFNTAEEAARAYDVEARRIRGKKAKVNFPDEAPAATPKRLKVSPEEPKENLNFVQPKVNKMINLEDYSMGHVEQKPPINQYSNISPFTGNGLDLTPLDASDNVTAYFSSEHSSNSFDYSDLGWGEQGRKTPDISSMFYAPMEGQSEFVQVANQQKNLQPNSENVVSVDDDPAKSVTEELLYMESHLKFFDQTPYLSESWDDSSLASFLGSQDSGNSMNLWSFDDMSSVAGGVF 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1085 383 CDD AP2 122 180 IPR001471 GO:0003700|GO:0006355
Lal18g1085 383 SMART rav1_2 122 185 IPR001471 GO:0003700|GO:0006355
Lal18g1085 383 ProSiteProfiles AP2/ERF domain profile. 122 179 IPR001471 GO:0003700|GO:0006355
Lal18g1085 383 MobiDBLite consensus disorder prediction 64 79 - -
Lal18g1085 383 Gene3D AP2/ERF domain 121 180 IPR036955 GO:0003700|GO:0006355
Lal18g1085 383 PANTHER DNA-BINDING DOMAIN 1 377 IPR044808 GO:0003700|GO:0009873
Lal18g1085 383 MobiDBLite consensus disorder prediction 63 127 - -
Lal18g1085 383 PANTHER EREBP TRANSCRIPTION FACTOR 1 377 - -
Lal18g1085 383 SUPERFAMILY DNA-binding domain 122 181 IPR016177 GO:0003677
Lal18g1085 383 MobiDBLite consensus disorder prediction 84 109 - -
Lal18g1085 383 Pfam AP2 domain 122 171 IPR001471 GO:0003700|GO:0006355
Lal18g1085 383 PRINTS Ethylene responsive element binding protein signature 123 134 IPR001471 GO:0003700|GO:0006355
Lal18g1085 383 PRINTS Ethylene responsive element binding protein signature 145 161 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1085 Lal-Chr18 13907723 13910630 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g1085 1 383 AP2-EREBP Transcription Factor Family AT3G14230 41.220 2.46e-57 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lal18g1085 AP2 3.4e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g1085 K09286 - gmx:100818646 420.239