Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1081 ATGCCAATGGATTCCTCTTCCAAAGGCAAGAAAAGAAAGTTAGAGATCAAAGAAGTTGATCACAACAACAAGCGTGACTTAACCTTCTCCAAACGCAAACTAGGGCTTTTCAACAAAGTCACTGAACTTTCCATTCTATGCCAAGCTGAAACTGCATTGATCATTTCCTCTCAACAAGGCAAGCTCCATGCTTGTGGCTACCCCAACCCTGATGTTGTCATCCGCCGTATTCTCAACGACGGGTCTCCGGTGCAACCCTCCGGTACCGGTAAAAAGGAGCATCAAGAATTGGTTGAAACCATGAATCTTGAATATGAGGCTACTCATAATAGGTTGAAAGAAGAGAAGAAAAGTTTGGCTGAGATCCAAGAAGCACGTAAGGGTCGTTTGGATTTTCCTCCTTGGTGGAATCAAGATATTGAAAATATGGGTTTGGAGGATCTTGAACATTTCACAGCTTCGTTGGAGACATTGAAGCTAAACCTTGTTGCTACATTAGAAGCAAAGAAGCTGAATTCTCAAAGGCCAATGTTTTCAAATTTGCCACTAGTGAATGAGTGTTTCAATGGAGATCATCAAGCATGGAATTTGATGAATGGTTGCAGCACTAGTAGAAACCCAATGGTTCCTAATCTTGGTTTTGGTCATTATTAG 654 0.4159 MPMDSSSKGKKRKLEIKEVDHNNKRDLTFSKRKLGLFNKVTELSILCQAETALIISSQQGKLHACGYPNPDVVIRRILNDGSPVQPSGTGKKEHQELVETMNLEYEATHNRLKEEKKSLAEIQEARKGRLDFPPWWNQDIENMGLEDLEHFTASLETLKLNLVATLEAKKLNSQRPMFSNLPLVNECFNGDHQAWNLMNGCSTSRNPMVPNLGFGHY 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1081 217 Gene3D - 21 107 IPR036879 GO:0003677|GO:0046983
Lal18g1081 217 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 7 176 - -
Lal18g1081 217 SMART madsneu2 9 68 IPR002100 GO:0003677|GO:0046983
Lal18g1081 217 SUPERFAMILY SRF-like 10 79 IPR036879 GO:0003677|GO:0046983
Lal18g1081 217 PRINTS MADS domain signature 11 31 IPR002100 GO:0003677|GO:0046983
Lal18g1081 217 PRINTS MADS domain signature 31 46 IPR002100 GO:0003677|GO:0046983
Lal18g1081 217 PRINTS MADS domain signature 46 67 IPR002100 GO:0003677|GO:0046983
Lal18g1081 217 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 20 64 IPR002100 GO:0003677|GO:0046983
Lal18g1081 217 PANTHER MADS BOX PROTEIN 7 176 - -
Lal18g1081 217 ProSiteProfiles MADS-box domain profile. 9 69 IPR002100 GO:0003677|GO:0046983
Lal18g1081 217 Coils Coil 102 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1081 Lal-Chr18 13873414 13874067 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g1081 3 171 Type I MADS-box Gene Family AT5G60440 33.333 1.46e-22 91.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lal18g1081 SRF-TF 1.2e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g1081 - - lang:109327877 362.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0583 6 3744530 3744985 Lal18g1081 18 13873414 13874067 LSH
Lal22g0520 22 3461460 3462149 Lal18g1081 18 13873414 13874067 LSH